Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq17432 120 2e-22 seq669 89.7 4e-13 >seq17432 Length=31749 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | || | ||||||||| || || ||| ||||||||||| || ||| Sbjct 25048 CCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 24989 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || ||| | || |||| |||||| || || || ||||| |||||||| ||| |||| Sbjct 24988 AGAGTG-CGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGG 24930 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || || || | | | || || | ||||||||| Sbjct 24929 AATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCAC 24870 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| || |||||||| ||||||||||| Sbjct 24869 TTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | |||||||| || || ||| |||||||| ||||||||| Sbjct 24592 CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAA 24533 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || ||| | || ||||| ||||| || || || |||| | ||| ||||| |||| Sbjct 24532 AGAGTG-CGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGG 24474 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||| || || | ||| || || | |||||||| Sbjct 24473 GATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCAC 24414 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| | |||||| ||||| |||||||| Sbjct 24413 CTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | |||||||| || || ||| ||||||||||||||||| Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || | || || | |||||| || ||||| |||| | || || ||| |||| Sbjct 24304 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGA 24245 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| ||||| || || | ||| || || | ||||||||| Sbjct 24244 ATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCACT 24185 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || ||||| | |||||| || ||||| ||||| Sbjct 24184 TCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | |||||||| || || ||| |||||||||||||| || Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || | || || | |||||| || || || || | || || || ||| |||| Sbjct 24760 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGA 24701 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||| || |||||| || || | ||| || || | ||||||||| Sbjct 24700 ATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCACT 24641 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| || || || || ||||||||||| Sbjct 24640 TCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 >seq669 Length=42814 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | || ||||| || || ||| || ||||| || ||||| Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || || || ||||| || ||||||||||| | ||||| ||| |||| Sbjct 32357 AGAGTG-CGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGG 32415 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| || ||| ||| || || | | | ||| || | ||||| || Sbjct 32416 AATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCGAC 32475 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| | || ||||||||||||||||| Sbjct 32476 CTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCAT 32523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354533972559060