Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq38498 187 6e-42 seq669 187 6e-42 seq17432 165 2e-35 seq214 165 2e-35 >seq38498 Length=6817 Score = 187 bits (206), Expect = 6e-42 Identities = 314/450 (70%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 238434 GAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGAT--TCTATAGAATCCACAC 238491 ||| |||| ||||||| || ||||||||| ||| |||||| ||| || | || Sbjct 5716 GAATTAGCGGATAATTACTGTTATTATAATGAAAATTATGATAATCTTAAGGGCGCTTAC 5657 Query 238492 ATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATTTACT 238551 | ||||| || | ||| | | | ||| || || | | | ||||| | || | Sbjct 5656 GAT--TGGGCGCGGAATACACTGAACACTCACCGGAAAGACAAACGCGAATATCTCTATT 5599 Query 238552 CTTTAAAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATAC 238611 |||| | || | ||||| || || |||||||| | | ||||| ||||| |||| || Sbjct 5598 CTTTTGAGAAGTTAGAGAGGGCTGAGACTCACGACCAGTTGTGGAACTCCGCTCAGAGAC 5539 Query 238612 AAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATAC 238671 ||||| |||| |||||||||||| | || | |||||||||||||| || ||||||| Sbjct 5538 AAATGACAAGAGATGGCAAAATGCATGGCTTTATGCGAATGTATTGGGCAAAGAAGATAC 5479 Query 238672 TTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAAT 238731 | || ||||| | | ||| | | || || || |||| | |||||||||| | Sbjct 5478 TCGAGTGGACACAAACACCAGAACAGGCGCTCGAATTCGCTATTCTTTTGAACGATAAGT 5419 Query 238732 ACGAACTCGACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGA 238790 ||||| | ||||| ||| || || ||||| || || || ||||||||||| |||||||| Sbjct 5418 ACGAATTGGACGG-ACGCGACCCCAACGGGTATGTCGGCTGTATGTGGTCTATATGTGGT 5360 Query 238791 TTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTAT 238850 | |||||| || |||| |||| || || | || || ||| || | |||||||| || Sbjct 5359 ATTCACGATCAGGGATGGGCTGAAAGGCCGGTGTTCGGCAAAATTCGTTACATGAACTAC 5300 Query 238851 GAAGGAACTAAGAAAAAATTTGATGTAAAT 238880 | ||| | || || |||||||| ||| Sbjct 5299 AAGGGATGTGAGCGCAAGTTTGATGTCAAT 5270 >seq669 Length=42814 Score = 187 bits (206), Expect = 6e-42 Identities = 184/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | ||| |||| ||| | || || || |||||||| || || ||| Sbjct 32294 ATTCCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCA 32353 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||||| ||||| || ||||| || | ||||| ||||| ||| Sbjct 32354 GAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGA 32413 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||||||||| ||||||||||| | || || || || Sbjct 32414 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCG 32473 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| || || |||||||| || || || ||||| |||||||| |||||||| |||| Sbjct 32474 ACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTTCTGTA 32531 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | ||| |||| ||| | || || ||||| || || || || ||| Sbjct 31840 ATTCCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 31899 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| |||| ||||| || ||||| || || ||||||||||| ||| Sbjct 31900 GAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGA 31959 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||||||||| || || ||||| | ||||||| | || Sbjct 31960 GGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTATCGGAGGCCTCC 32019 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 32020 ACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCATT 32070 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| | | ||| || | ||| | || || || |||||||| || || |||| Sbjct 31613 TTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAG 31672 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | ||||| | ||||| |||| ||||| || ||||| || || ||||||||||| |||| Sbjct 31673 AGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAG 31732 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || ||||| || |||||||||||||| || || ||||| | |||||| || || | Sbjct 31733 GAATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCA 31792 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || | ||||| ||||| || || || || || || |||||||||||| Sbjct 31793 CTTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 31842 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || ||||||||||| ||||| || ||||| || |||||||||||||| || || ||| Sbjct 32165 ATCAGTCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTT 32224 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || || || | ||||| ||||| || || || ||||| || Sbjct 32225 TCGATGGTGTCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACG 32284 Query 104549 AATATCTGCATT 104560 |||||||||||| Sbjct 32285 AATATCTGCATT 32296 >seq17432 Length=31749 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||||| | ||| | || || || || ||||||||||| ||| Sbjct 24367 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCA 24308 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| ||||||||||||||||| || ||||| || || ||||||||||| ||| Sbjct 24307 GAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGA 24248 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || ||||| || || | ||| || || || Sbjct 24247 GGAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCC 24188 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||| ||||| || || || || || || |||||||||||| Sbjct 24187 ACTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCATT 24137 Score = 158 bits (174), Expect = 3e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||||| | ||| | || || || || ||||| || || || Sbjct 23975 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCG 23916 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||||||||||||||| || ||||| || || |||||||| || ||| Sbjct 23915 GAGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGA 23856 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||||||||| || || || || || | ||| ||| || || Sbjct 23855 GGGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCC 23796 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| || ||||| || || || || | ||||| || || || |||||||||| Sbjct 23795 ACCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTTGT 23741 Score = 156 bits (172), Expect = 1e-32 Identities = 178/238 (75%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| ||||| ||||| || | ||||| | ||| | || || || || |||||||| Sbjct 24830 TATTTGCATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATT 24771 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||||||| || |||| ||||||||||||||||| || || || || || | |||||| Sbjct 24770 ATAGTCAGAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTG 24711 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| || || ||||| |||||||| || || || || || || | ||| || Sbjct 24710 ATCCGGAGGAATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGA 24651 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || | || || ||||| || || | |||||| || ||||| |||||| Sbjct 24650 CGGCTCCACTTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCATT 24593 Score = 125 bits (138), Expect = 2e-23 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| ||||| ||||| | | ||||| | ||| | || || || || ||||| || Sbjct 24602 TATTTGCATTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTT 24543 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| || || ||||| | |||||||| | ||||| || || || || || || ||||| Sbjct 24542 ATAATCGGAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTG 24483 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || ||||| || ||||||||||| || || || || || || || || | ||| ||| Sbjct 24482 GTCGGGAGGGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGA 24423 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || || || || || || || || || || ||||| || |||||| Sbjct 24422 GGGCTCCACCTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 24365 >seq214 Length=17119 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | ||| | || || || || || || || || || Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCTA 1015 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| |||||||||| |||||| |||||||| || | || ||| ||||| |||||| Sbjct 1016 AGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGGT 1075 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || |||||||||||||| |||||||| || | |||||||| || || ||| Sbjct 1076 ATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTCCACC 1135 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || |||||||| || | || || || || || ||||||||| Sbjct 1136 TCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTTG 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150567182107260