Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq669 141 8e-29 seq17432 140 3e-28 >seq669 Length=42814 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||| || | || || || | || || ||||| || | ||| ||||| Sbjct 32293 CATTCCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 32352 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | |||| || || | |||||| || |||| || ||||| |||||||| || Sbjct 32353 AGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGG 32412 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| ||||||||||| | ||| |||||||| || ||| |||||||| | | || Sbjct 32413 AGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTC 32472 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct 32473 GACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCAT 32523 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||||||| || | ||||| || | ||| || ||||| || | ||| ||||| Sbjct 31614 TCCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGA 31673 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | |||| | ||||| | |||||| || ||||||| | ||| || ||||| ||||| Sbjct 31674 GAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGG 31733 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||||||||| ||||| | ||| |||||||| ||| ||| || || | || || Sbjct 31734 AATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCAC 31793 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| ||||| || || || ||||| || |||||||| Sbjct 31794 TTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCAT 31841 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||| || | || || || | || || || ||||| | ||| ||||| Sbjct 31839 CATTCCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATC 31898 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | |||| | ||||| | |||||| || ||||||| | ||| || ||||| || Sbjct 31899 AGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGG 31958 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| ||||| ||||| | ||| |||||||| ||| ||| || || | | || Sbjct 31959 AGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTATCGGAGGCCTC 32018 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||| || || |||||||| || || ||||| Sbjct 32019 CACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 >seq17432 Length=31749 Score = 140 bits (154), Expect = 3e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||| || | ||||| || | || || |||||||| | ||||| Sbjct 24600 TTTGCATTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTAT 24541 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| | |||| || |||| |||||| ||| | ||||| | |||||| || | Sbjct 24540 AATCGGAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGT 24481 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| || |||||||| || | ||||| ||||| ||| | | ||||| | | Sbjct 24480 CGGGAGGGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGG 24421 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || ||||||||||| || ||||| || |||||||| ||||| Sbjct 24420 GCTCCACCTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 120 bits (132), Expect = 3e-22 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| || | ||||| || | ||| || |||||||| | |||| Sbjct 24372 TTTGCATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTAT 24313 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | |||||| | || || || ||||| || ||||||| | ||| || || Sbjct 24312 AATCAG--AGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTG 24255 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| |||||||||||||||||||| | ||||| ||||| ||| | | ||||| | Sbjct 24254 ATCCGGAGGAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGA 24195 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || ||||| || ||||| || || || |||||||| Sbjct 24194 CGGCTCCACTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||||| || | ||||| || | || || |||||||| | ||| ||||| Sbjct 23976 CATTCCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATC 23917 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | |||| | || || || ||||| || ||||||| | ||| || || || || Sbjct 23916 GGAGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGG 23857 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| || || |||||||| | ||| || ||||| ||| | | ||||| | | | || Sbjct 23856 AGGGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTC 23797 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| || ||||||||||| || | |||||||| || || ||||| Sbjct 23796 CACCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCAT 23746 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| | ||| | |||||| || | || || |||||||| | || || ||| Sbjct 25049 TCCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 24990 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | |||| || ||||| ||||| || | ||||| |||| ||||||||| ||||| Sbjct 24989 AAGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGG 24930 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||||||| | ||| || ||||| || ||| ||||| | | || || Sbjct 24929 AATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCAC 24870 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || | || ||||| || || ||||| Sbjct 24869 TTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| || | ||||| || | ||| || |||||||| | |||| Sbjct 24828 TTTGCATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTAT 24769 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | |||||| | || || || ||||| ||| | ||||| | | || || Sbjct 24768 AGTCAG--AGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTG 24711 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| ||||||||||| |||||||| | |||||| ||||| ||| | | ||||| | Sbjct 24710 ATCCGGAGGAATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGA 24651 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| ||||| || | ||||| || || || ||||| Sbjct 24650 CGGCTCCACTTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447975462904200