Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5493 123 4e-23 >seq5493 Length=18645 Score = 123 bits (136), Expect = 4e-23 Identities = 222/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 ||||| || || ||||| || |||||||| || || ||| | ||| | || || Sbjct 17033 GGTGTGGCTAAATTGTACGGCTATTGGATTGTCGTAAACTATAGGGAGGCCTACAATATC 16974 Query 193935 CACGCTAGTTC-TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGT 193993 || ||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| Sbjct 16973 TTTGC-AGTGAATGGTATTCTATTCAATCACGAATCTCCCCGAAGAGGAGAGACATTTGT 16915 Query 193994 AACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTT- 194052 ||||| ||||| || | | | | |||| |||| | || || | || |||| Sbjct 16914 CACTCGAAAGATCACCCGATCTGTGGCTAAAATCT-TATTAAATGAGTTGGAATACTTTG 16856 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 | ||||| ||| | | | | | |||||||| |||||| || ||| | || || | Sbjct 16855 AGCTTGGCAATTTGGACTCACGGCGTGATTGGGGTCACGCACGTGACTATATCGAGGCCA 16796 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGT 194172 ||||| | ||| | |||||| ||| |||| | |||||||| ||| | || | |||| | Sbjct 16795 TGTGGCTTATGCTTCAACAGAATGCACCCCAAGATTATGTCATTTCCACCGATGAATCGC 16736 Query 194173 ATTCTGTTAGAGACTTTGT 194191 |||| ||| | || || || Sbjct 16735 ATTCGGTTCGTGAGTTCGT 16717 Score = 111 bits (122), Expect = 3e-19 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGT 193704 ||||||| || ||| | | || || |||||||| || || || ||||| | || | Sbjct 17365 CTGAGATATACAATTTGGCGGCACAGAGTCATGTGAAGGTGTCGTTTGATTTAAGTGAAT 17306 Query 193705 ATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGG 193764 | || ||||||| ||||| || ||||||||||||||||| || || |||| | | | Sbjct 17305 ACACCGCTAATGTCGATGCGTTGGGAACTCTTAGAATACTGGATGCCATTCGAACG--GC 17248 Query 193765 GAA--TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGT 193822 || ||||||| ||| ||| |||||||||| || || ||||| ||||| || Sbjct 17247 TAATCTGGAGAAGTCTGTCCGCTTCTATCAGGCCTCCACTTCTGAACTCTATGGAAAAGT 17188 Query 193823 TCTAGGCACT-CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 | || | | |||| | |||| || |||||||| ||||| || || ||||||||| Sbjct 17187 AC-AGCAAATACCACAAACAGAGACTACACCATTCCATCCCCGTTCCCCTTATGGT 17133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806986428778200