Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq13154 125 2e-24 seq55999 104 7e-18 seq54750 98.7 3e-16 >seq13154 Length=83798 Score = 125 bits (138), Expect = 2e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 32900 CCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTC 32959 || || |||||||||||||| || | | |||| ||||| || ||| | |||| | Sbjct 29299 CCCCCTAGCATTTGCATGGTGCCTCCTAGATTGACGACCACTTCAGTTGTGTAGCGATCC 29358 Query 32960 TGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 33019 || || |||| || |||||||| | ||| | || | ||||| | |||||||| || Sbjct 29359 TGACCGTTTTGATCTTGCCATTTGCGTGTTTGTAAGGTCCCTTCGATATAAACCTGCGAT 29418 Query 33020 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGC 33079 || ||||||| ||| || | || | ||| || | ||| ||| || || ||||| ||| Sbjct 29419 CCCTTTCGCAAATATTCTTTTGCCACTTCAGCTATTTTACCGAACAAAACGACACGATGC 29478 Query 33080 CACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCA 33123 || || |||| ||||||| | |||||||| | |||||| ||||| Sbjct 29479 CATTCTGTCTTCTCCTTTGGTTCGCCAGTTTGTTTATCGCGCCA 29522 >seq55999 Length=1557 Score = 104 bits (114), Expect = 7e-18 Identities = 185/267 (69%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 39978 TACGGCATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGTATTGGCGATGACGAT 40037 |||| | || || | || ||||||||| ||||||| ||| || | | || || ||| Sbjct 1481 TACGACGTCAAGCTGTTTATCATCGACTCGCTCATGATGTGTGGCTTAAGTGAAGAGGAT 1422 Query 40038 TACAACGGGCAAAAGGCGTTTGTTGATTCGCTGTGCGACTTCAAGAATAAAACCAAC-TC 40096 |||| ||| ||||| | || | || | |||||||| ||||| || || | || Sbjct 1421 TACACCGGTCAAAAAGAATTCATAGAAGCCCTGTGCGAGTTCAA-----AACCCGTCATC 1367 Query 40097 T----CACATTATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCG 40152 || ||| | || || || ||| |||||||| || | ||| || |||||| | Sbjct 1366 CGGTGCATATTTTGCTGGTAACACACCCCAGAAAGCTTGAGAACGAAGAAAAACCTGTGG 1307 Query 40153 GAAAGATGGACGTAAAAGGCTCAGGAGCGATTACAGACCTGACGGATAACCTGTTTATCA 40212 | || |||||||| |||||| | || || || || || | || |||||||| | | || Sbjct 1306 GTAAAATGGACGTGAAAGGCACCGGCGCCATCACCGATTTAACCGATAACCTACTGACCA 1247 Query 40213 TCTGGCGCAATAAAGCTCGCGAGAGAG 40239 |||||||||||||| ||||| |||| Sbjct 1246 TCTGGCGCAATAAAAAGCGCGA-AGAG 1221 >seq54750 Length=1096 Score = 98.7 bits (108), Expect = 3e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46209 TACCACTTCAGCAATGAAGCTAACCTCATAAACCGGATCGTGCTGGGAACCACTGCGGCT 46268 ||||| |||||||||||||| ||||| || ||||| || | | || | || || ||| Sbjct 782 TACCATTTCAGCAATGAAGCAAACCTTATTAACCGTATTGCCTTAGGCATGACCGCTGCT 841 Query 46269 AAATTCCGCAAAGAGAATGATATCGGCAAAACAGAAGCAATCCGGGATTACCTTACCGCT 46328 || || | | || || | |||| ||| || | || ||| | || || | Sbjct 842 AAGTTTAGAGTTTGCCACGACATTGAGAAAAAAGAGCCAGTTCGTGATCATCTGACTTTT 901 Query 46329 GAGCAGATCCGCGCAATTACTGAATTGCAACGTGCTGATACAGTCTTCATCAACATGGGG 46388 ||||| ||||| || |||||||| || || ||| |||| || |||||||| ||||| Sbjct 902 GAGCAAATCCGATGCATAACTGAATTACAGCGAGCTAATACTGTGTTCATCAATATGGGA 961 Query 46389 TGGGACTTTGAACGACGCAAAGCCGAGTTAAAAAGTTTATTCGATCGTAACCAC 46442 ||||| || | | ||| ||||| || || | ||| || || || ||||| ||| Sbjct 962 TGGGAGTTCGTGCAACGAAAAGCTGAATTGACAAGATTGTTTGAGCGTAAGCAC 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149858063303180