Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11840 226 4e-54 seq4930 114 2e-20 seq12913 98.7 1e-15 >seq11840 Length=1854 Score = 226 bits (250), Expect = 4e-54 Identities = 454/674 (67%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||| ||||| || | |||| || | || |||||||| || || || || | | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||| || || || || || || || || || |||||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62516 ||||| | | || ||| | ||| || || || || |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 62517 GA-------CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 62569 | |||| | || ||| |||||||| ||| | | ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTA-------TTGAAGAATACCTTTAGAGACCGGCGA 958 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 ||| ||||||| || || ||||| || | ||| | ||||||||| ||||| || || Sbjct 959 ACCTTCATATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGC 1018 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 62689 |||||||| ||||| || || |||| |||| || || ||||| | || ||||| Sbjct 1019 GCCGTAATATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAA 1078 Query 62690 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCT 62749 || | | | |||||||| ||| || || || ||||| ||||||||||| |||| Sbjct 1079 GGGCTGACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCG 1138 Query 62750 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62809 ||||||||||||||| || | ||| || | |||||| || |||| || || ||||| Sbjct 1139 GTGTCTCTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTT 1198 Query 62810 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-----AAAT 62864 |||||||||||| || ||||| |||| || || ||||| |||||| | | Sbjct 1199 ATTGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAG 1258 Query 62865 CGCCCATCTATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 | ||| | | || || || ||||| |||| || |||| ||| || || || | ||| Sbjct 1259 CTCCCTTTTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 62924 A--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981 | || | | || || | ||||| || ||||| | || ||||| || ||||| Sbjct 1319 ATCTTTGGA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCC 1376 Query 62982 AAATTTTGTTGATT 62995 |||||||||||||| Sbjct 1377 AAATTTTGTTGATT 1390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 |||| ||| | ||| |||||||| || || || |||||| | || | ||| |||| Sbjct 1565 TTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACAGTCGTGAAGTCCGGGAC 1624 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 | || | |||||||||| |||||| | ||| ||| || || |||||| || | Sbjct 1625 ACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTACGCGACGCATAAACAGGT 1684 Query 63235 CAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 | ||||||||||| || || ||| |||||||||| ||| | || || ||| || || Sbjct 1685 CCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCTCTTCTGATCCGGTGTTT 1743 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 || | | ||| | |||| | | || | |||||||| |||| ||||||||| Sbjct 1744 TTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCTCCAGGTATATGGC 1799 >seq4930 Length=2674 Score = 114 bits (126), Expect = 2e-20 Identities = 310/465 (67%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 63636 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63695 || ||||| || ||||| ||||| | || || || || || || || | ||| || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 63696 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63755 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 63756 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 63814 ||| ||| ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA---C 63871 |||||| |||| || ||||| || | ||||| ||| ||| || ||| | || | Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 63872 TATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAA-CAT 63930 | ||| || || | || || || || | | | || | | ||| ||| Sbjct 240 TTTATAGATC-TGGTCG--GAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT 296 Query 63931 AGTTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 63989 || | | || || | || || ||| || ||||| || || |||||||||||| Sbjct 297 --TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTT 354 Query 63990 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCT 64049 || || |||||||||| || || | || ||||||| |||| ||| || ||||| Sbjct 355 GAGACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCC 414 Query 64050 GCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64094 ||||||||||| |||| ||||||| || || ||||||||| Sbjct 415 GCTATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq12913 Length=27019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 32982 ATGATTATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAA 33041 ||||| |||| | | |||||| || |||| || || ||||| || ||||| || || Sbjct 26882 ATGATCCTCTTTGTTGGCCATAACACCACTTTTCTGATACTCACCGACCCGTTTCTCAAA 26941 Query 33042 AAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33093 ||||| || |||||||||||||| || | |||||||||||||||||||||| Sbjct 26942 GAAATTGGTCTTTCCTTCCAATGAAATTTGTTCCATGAAATCAAACGGATTG 26993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622508450500200