Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq669 150 1e-31 seq17432 134 9e-27 seq54855 125 5e-24 seq214 114 9e-21 seq54283 87.8 1e-12 >seq669 Length=42814 Score = 150 bits (166), Expect = 1e-31 Identities = 183/248 (74%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 38071 AAATACAAATCCAATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCC 38129 |||| |||| || ||| || || ||||||||||| | |||||||| ||||| |||| Sbjct 31594 AAATCCAAAGACATTCAATTTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCC 31653 Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 || ||||| ||||||||||| | | || |||| ||||| ||||| || ||||| || Sbjct 31654 TTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATA 31713 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || | |||||||| | || | ||||| |||||| ||| ||| |||||| || | | Sbjct 31714 AGTCTCTGTTGATCCGGAGGAATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCG 31773 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||| | || ||||| || ||||| || || || || | ||| ||||||||| Sbjct 31774 ATGGTATCCGAAGCCTCCACTTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAT 31833 Query 38310 ATCTGCAT 38317 |||||||| Sbjct 31834 ATCTGCAT 31841 Score = 132 bits (146), Expect = 3e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | || |||||||| || |||||| ||||| ||||||| Sbjct 32293 CATT-CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAAT 32351 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| |||| ||||| ||||| || |||||||| | | || ||||| | Sbjct 32352 CAGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCG 32411 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| ||| ||| ||| ||||| | || ||| || | Sbjct 32412 GAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCT 32471 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || | || ||||| || || || | ||||||||| ||||| ||||| || Sbjct 32472 CGACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTT 32526 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | || |||||||| || ||| ||||| || ||||||| Sbjct 31839 CATT-CCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAAT 31897 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || |||| ||||| ||||| || ||||| || || | |||||||| | Sbjct 31898 CAGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCG 31957 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||| |||||| ||| ||| ||| || || | || ||||| | Sbjct 31958 GAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTATCGGAGGCCT 32017 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||| || || || || | ||||||||||||||| ||||| Sbjct 32018 CCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 >seq17432 Length=31749 Score = 134 bits (148), Expect = 9e-27 Identities = 172/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | |||||||||||||| ||||||||||||||| || | Sbjct 24824 CATT-CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGT 24766 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || |||| |||| |||||| ||||| || || || || |||||||| | Sbjct 24765 CAGAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCG 24706 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TT 38264 || | || ||||||||| |||||| |||||| |||| | || || | || Sbjct 24705 GAGGAATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTC-CGACGGC 24647 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || || || ||||| ||||| |||||||| ||||| Sbjct 24646 TCCACTTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 Score = 132 bits (146), Expect = 3e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | ||||||||||| || |||||||||||| ||||||| Sbjct 23976 CATT-CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAAT 23918 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | || |||| |||| |||||| || ||||| || || | ||||| |||| Sbjct 23917 CGGAGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGG 23858 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| ||||||||| ||| || |||||| |||| | || || | Sbjct 23857 GAGGGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCT 23798 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || | ||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 23797 CCACCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 125 bits (138), Expect = 5e-24 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | |||||||||||||| ||||||||||||||| |||| Sbjct 24368 CATT-CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAAT 24310 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || |||| |||| |||||| || ||||| || || | |||||||| | Sbjct 24309 CAGAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCG 24250 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TT 38264 || | ||||||||||| ||||| ||| || |||| | || || | || Sbjct 24249 GAGGAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTC-CGACGGC 24191 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||| || || || |||| || || |||||||||||||| Sbjct 24190 TCCACTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | || | |||||||||||| || |||||||||||||||||| || || Sbjct 25048 CCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 24989 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | |||||| || || || || | ||||| ||||| | || Sbjct 24988 AGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGA 24929 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAAC 38269 | ||||||||||| ||| || ||| ||||||| || || || | || || || Sbjct 24928 ATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTC-CGACGGCTCCAC 24870 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || || || ||||| || ||||||||||| ||||| Sbjct 24869 TTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 Score = 100 bits (110), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | ||||||||||| || |||||||||||| || |||| Sbjct 24596 CATT-CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAAT 24538 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | || |||| || || ||||| ||||| || || || | |||||| |||| Sbjct 24537 CGGAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGG 24478 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 |||| ||||||||| || ||||| ||| || |||| Sbjct 24477 GAGGGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCT 24436 >seq54855 Length=316 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 226 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 285 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||||| Sbjct 286 TGTAATATTTAGCCTTA 302 >seq214 Length=17119 Score = 114 bits (126), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| | || |||||||||||| || ||||||||| || |||||||| | Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATC-GCT 1014 Query 38151 AAAACACGTTC----GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | |||| ||| ||||||||||| || ||||| || | || || ||||| | Sbjct 1015 AAGA---GTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGG 1071 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | ||| || |||||| ||| ||| ||| ||||||| | |||||| | || Sbjct 1072 AGGTATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTC 1131 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | || || || ||||||||||| || || ||||| || ||||| || Sbjct 1132 CACCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTT 1185 >seq54283 Length=1144 Score = 87.8 bits (96), Expect = 1e-12 Identities = 59/66 (89%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1079 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1138 Query 25957 TAATCC 25962 | |||| Sbjct 1139 TGATCC 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334717190187695