Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11840 230 3e-55 seq4930 113 6e-20 seq6890 93.3 5e-14 seq43315 89.7 7e-13 seq12913 82.4 1e-10 >seq11840 Length=1854 Score = 230 bits (254), Expect = 3e-55 Identities = 455/674 (68%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||| ||||| || | |||| || | || |||||||| || || || || | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||| || || || || || || || || || |||||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371 ||||| | | || ||| | ||| || || || || |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 62372 GA-------CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 62424 | |||| | || ||| |||||||| ||| | | ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTA-------TTGAAGAATACCTTTAGAGACCGGCGA 958 Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62484 ||| ||||||| || || ||||| || | ||| | ||||||||| ||||| || || Sbjct 959 ACCTTCATATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGC 1018 Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAA 62544 |||||||| ||||| || || |||| |||| || || |||||| | || ||||| Sbjct 1019 GCCGTAATATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAA 1078 Query 62545 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 62604 || | | | |||||||| ||| || || || ||||| ||||||||||| |||| Sbjct 1079 GGGCTGACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCG 1138 Query 62605 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62664 ||||||||||||||| || | ||| || | |||||| || |||| || || ||||| Sbjct 1139 GTGTCTCTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTT 1198 Query 62665 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-----AAAT 62719 |||||||||||| || ||||| |||| || || ||||| |||||| | | Sbjct 1199 ATTGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAG 1258 Query 62720 CGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 | ||| | | || || || ||||| |||| || |||| ||| || || || | ||| Sbjct 1259 CTCCCTTTTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 62779 A--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | || | | || || | ||||| || ||||| | || ||||| |||||||| Sbjct 1319 ATCTTTGGA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCC 1376 Query 62837 AAATTTTGTTGATT 62850 |||||||||||||| Sbjct 1377 AAATTTTGTTGATT 1390 Score = 102 bits (112), Expect = 1e-16 Identities = 176/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 62953 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 ||| || |||||| |||| ||| | ||| |||||||| || || || |||||| Sbjct 1548 TTTATACTTCTTTTGGTTTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACA 1607 Query 63013 ATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63072 | || ||||| ||||| || | |||||||||| |||||| | ||| ||| || Sbjct 1608 GTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTAC 1667 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATGTT 63131 || |||||| || || ||||||||||| || || ||| |||||||||| ||| | | Sbjct 1668 GCGACGCATAAACAGGTCCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCT 1726 Query 63132 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63191 | || ||| || || || | | ||| | |||| | | || | |||||||| | Sbjct 1727 CTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCT 1786 Query 63192 CCAAGTATATGGC 63204 ||| ||||||||| Sbjct 1787 CCAGGTATATGGC 1799 >seq4930 Length=2674 Score = 113 bits (124), Expect = 6e-20 Identities = 308/463 (67%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 63491 GAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63550 || |||||||| ||||| ||||| | || || || || || || || | ||| || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 63551 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 63611 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 63669 ||| ||| ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC 63729 |||||| |||| || ||||| || | ||||| ||| ||| || ||| | || || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 63730 ATCCATGGTAATACT-TGAAATAATAGGAAAATG-TTTCCCATTTTTAGGATTGACATAG 63787 | || | | | || || ||||| | |||| | | | | ||| Sbjct 240 -TTTATAGATCTGGTCGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT-- 296 Query 63788 TTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 63846 || | | || || | || || ||| || ||||| || ||||||||||||||||| Sbjct 297 TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTTGA 356 Query 63847 TACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 63906 || ||||||| || || || | || ||||||| |||| ||| || ||||| || Sbjct 357 GACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCCGC 416 Query 63907 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCA 63949 ||||||||| |||| ||||||| || || ||||| ||| Sbjct 417 TATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq6890 Length=28606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/176 (74%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 27441 CTCCAAGATACCAGTATACCTCAAAAATTTGAGTGAGATCTGCTGCCAA--GTTC-CTAT 27497 |||| | ||||||||| || || || |||| | | |||| | ||||| ||| | || Sbjct 16680 CTCCCAAATACCAGTAAACTTCGAATATTTTGGATAAATCTTCGGCCAAAAGTTGGCAAT 16621 Query 27498 TATTGAAGATCGCAATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAG 27557 ||| || | |||| || | ||||||||| ||||||||||||||||| |||||||| | Sbjct 16620 CATTCAAAA---CAATCCCCATTTCCTTGACATGAGTTAATGATCTCCAGTCCATATTCG 16564 Query 27558 CGCTTCCTAAATAAATATGTGTATTATCAGATATCCAA--AATTTTGTATGAAGAA 27611 |||| || | ||| | || | | ||||| ||| | || |||||||| || |||| Sbjct 16563 CGCTCCCGATATATAAATCTTTTTTATC-GAT-TAGAATGAATTTTGTGTGGAGAA 16510 >seq43315 Length=222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 63212 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 || ||||||||||| |||||||| |||| |||| |||||| || |||||||||| | | Sbjct 75 CCGGGCCGTTTGTTCCCTCCCTGGTCTACATATCGAGCGGTATTGTTATAAACTCGAAGC 134 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 || |||| | |||||||||||| || || || || | ||| || | || |||||| Sbjct 135 ATAGGAACCAAACCATTGGATGTGCCGTTAGTGCCGGCGATGTAAGTGCCCGCCGCACGA 194 Query 63332 AT 63333 || Sbjct 195 AT 196 >seq12913 Length=27019 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAA---ATGATTGTCTTCTTGAGACATAACTCCCATTTT 32371 ||| |||||| | || ||| || ||||| |||| | | |||||| || |||| Sbjct 26855 TTAGAAGTCAGCGTCGAGAACGAACTTATGATCCTCTTTGTTGGCCATAACACCACTTTT 26914 Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 || || ||||| || ||||| || || ||||| || || ||||| ||||| || | ||| Sbjct 26915 CTGATACTCACCGACCCGTTTCTCAAAGAAATTGGTCTTTCCTTCCAATGAAATTTGTTC 26974 Query 32432 CATGAAATCGAATGGATTG 32450 ||||||||| || |||||| Sbjct 26975 CATGAAATCAAACGGATTG 26993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633185725062000