Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17432 165 7e-36 seq669 140 3e-28 seq214 140 3e-28 seq38498 98.7 9e-16 >seq17432 Length=31749 Score = 165 bits (182), Expect = 7e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || ||||| |||||||| || ||||||| | ||||||||| |||| Sbjct 24821 AATGCAAATATTCGTGAAGACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24880 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| | || | ||| ||||||||||||||||| || || | Sbjct 24881 GGACACCATCGAGAATGTAAAGGCTAAGATTCAA-GACAAAGAAGGGATTCCTCCGGATC 24939 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || || || ||||||||| | ||||| | |||||| | ||| |||| Sbjct 24940 AGCAACGATTGATCTTCGCTGGCAAACAACTGGAAGACGGGCGCACTCTTTCCGACTACA 24999 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||| || || || || ||||| ||||| | || ||||||||| Sbjct 25000 ATATTCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGACTCAGAGGAGGA 25049 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || || || |||||||| || ||||||| | ||||||||| |||| Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24652 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| |||| || |||| ||| |||||||| || ||||| || || | Sbjct 24653 GGACACCATTGAGAACGTGAAGGCGAAAATTCA-GGACAAAGAGGGTATTCCTCCGGATC 24711 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| |||| || |||||||||||| ||||||| | || || | || || | Sbjct 24712 AACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATA 24771 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||| || || || || ||||| || || | || |||||||||| Sbjct 24772 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGAA 24822 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || |||||| ||||||| || | || || | ||||||||| |||| Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTC 24196 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||||| ||||||||||| ||||| || || || Sbjct 24197 GGACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCA 24256 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| ||||||||| ||||||| | || || | ||||| || Sbjct 24257 ACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATAA 24316 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || || || || ||||| || || | || |||||||||| Sbjct 24317 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGAA 24366 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| ||||||| ||| |||| || | || |||||| | || Sbjct 24365 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTC 24424 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||||| || |||||||| || || || ||||| Sbjct 24425 CGACACCATTGAGAACGTTAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCCGACCA 24484 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||||||||| || ||||| | |||||| | |||||| || Sbjct 24485 ACAAAGACTGATCTTCGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAA 24544 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || || || ||||| || || | | |||||||||| Sbjct 24545 CATTCAAAAGGAGTCGACCCTTCATTTGGTACTCCGTTTGAGAGGAGGAA 24594 >seq669 Length=42814 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || | ||||| || | ||||| | || || ||| | || Sbjct 32524 AATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGCCCTC 32465 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||| | ||| |||| | ||| ||||||||||| ||||| || || | Sbjct 32464 TGACACTATCGAAAATGTAAAGGCAAAGATTCAG-GACAAAGAAGGCATTCCTCCGGATC 32406 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || ||||| |||||||| |||||||| | |||||| | ||||||| Sbjct 32405 AGCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCTCTGATTACA 32346 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| || || || || || |||||||| || | | |||||||||| Sbjct 32345 ACATTCAGAAGGAGTCAACCCTTCATTTAGTTCTTCGTTTGAGAGGAGGAA 32295 Score = 136 bits (150), Expect = 3e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||| | ||||| || |||| || | ||||||||| | || Sbjct 31842 AATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTC 31783 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| ||||| |||| | ||| ||||| ||||| ||||| || || | Sbjct 31782 GGATACCATCGAAAACGTGAAGGCAAAGATTCAG-GACAAGGAAGGTATTCCTCCGGATC 31724 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | |||| ||||| |||||||| ||||| || | |||||| | ||||||| Sbjct 31723 AACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACA 31664 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 | ||||| || || || || || ||||| || || | | ||||||||||||| Sbjct 31663 ACATTCAGAAGGAGTCGACTCTCCATTTGGTTCTTCGTTTGAGAGGAGGAAATT 31610 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || || || | ||||| || | || || | ||||||||| | || Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 25058 TGACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || |||| | | | | ||||| | ||| ||||| ||||| ||||| || || | Sbjct 32010 CGATACCATCGAAAACGTTAAGGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCGGATC 31952 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | |||| ||||| |||||||| ||||| || | |||||| | ||||||| Sbjct 31951 AACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACA 31892 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || |||||||| || || || |||||||| || | | |||||||||| Sbjct 31891 ACATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGGAA 31841 >seq214 Length=17119 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| ||||| ||||||| | || |||||| | Sbjct 1183 AATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAGCCCAG 1124 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| | ||| |||| | ||| ||||| || || || || || || | Sbjct 1123 CGATACTATTGAGAATGTAAAGGCAAAGATTCAG-GACAAGGAGGGCATACCTCCGGATC 1065 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | |||||| | || ||||| ||||||||||||||||| | | ||| | ||||||||| Sbjct 1064 AGCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAGCGATTACA 1005 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| || || || || ||||| ||||| || || |||||||| Sbjct 1004 ACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGAGACTGAGAGGAGG 956 >seq38498 Length=6817 Score = 98.7 bits (108), Expect = 9e-16 Identities = 212/315 (67%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 50971 ATGTATAAATCCACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTG 51030 |||||| || || | |||||| |||| ||| ||| ||||||||| || | ||| || Sbjct 5262 ATGTATTGATTGACATCAAACTTGCGCTCACATCCCTTGTAGTTCATGTAACGAATTTTG 5321 Query 51031 CCAAAAATTTTGCGTTCTTTGAACGG---CCTG-TCGTGCACACCGCAAATTGACCACAT 51086 || || | || |||| | | |||| ||||| | ||| || || |||||||| Sbjct 5322 CCGAACAC----CGGCCTTTCAGCCCATCCCTGATCGTGAATACCACATATAGACCACAT 5377 Query 51087 ACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATAT 51146 ||| || ||||| ||| || ||||| || |||| ||| | |||||| | || || Sbjct 5378 ACAGCCGACATACCCGTTGGGGTCGCGTCCGTCCAATTCGTACTTATCGTTCAAAAGAAT 5437 Query 51147 GGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTA 51206 || | | | ||| |||| | | ||||| || | || ||||| ||||| || Sbjct 5438 AGCGAATTCGAGCGCCTGTTCTGGTGTTTGTGTCCACTCGAGTATCTTCTTTGCCCAATA 5497 Query 51207 CATGCGCATGTAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCA 51266 ||| ||||| | || ||||| ||||| || | | || ||||| |||||||| Sbjct 5498 CATTCGCATAAAGCCATGCATTTTGCCATCTCTTGTCATTTGTCTCTGAGCGGAGTTCCA 5557 Query 51267 CAATTCGTCGTGAGT 51281 ||| | ||||||||| Sbjct 5558 CAACTGGTCGTGAGT 5572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433030431631175