Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq55013 168 3e-37 seq22457 141 4e-29 seq54883 113 2e-20 seq11509 100 1e-16 >seq55013 Length=475 Score = 168 bits (186), Expect = 3e-37 Identities = 270/394 (69%), Gaps = 33/394 (8%) Strand=Plus/Minus Query 45692 ATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCGAGACGGGCACAC 45751 || ||||| ||||| || |||||| || || ||||| || || || | |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 45752 TGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGTCCGGTGATT 45811 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 45812 TCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATTCGGTAACG 45871 || ||| || ||||| ||| |||| || || Sbjct 286 ------------------------GG---GCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 45872 CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTACAGGATTCATTGTCCTGC 45931 | | ||||||| ||||| || ||||| || ||||| || |||| | || ||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 45932 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGGGACCAGCCATCAACG 45991 | ||| |||||||||||| || | |||||| || ||||| || ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 45992 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCAC 46051 || || ||||| ||||| ||| ||||| ||||| ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 46052 GGATTAAGACCGTACTGGTTGGCGACGATCAGCA 46085 ||||| || || || || |||| || || |||| Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCA 43 >seq22457 Length=815 Score = 141 bits (156), Expect = 4e-29 Identities = 122/148 (82%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 41003 TGAGTTGACTGGTCATGATGAC--CTCCTTTGAAGTTTTAGTTAGCAATCACCAGTTAGT 41060 ||| |||| | | ||||||| ||||||| |||||||| | | | ||||| ||| Sbjct 670 TGATTTGAGTCGCCATGATGGGTGCTCCTTTTGTGTTTTAGT--GTCAGCGCCAGTCAGT 727 Query 41061 GGCTGGTGATCGGGTGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCG 41120 ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 728 AGCTGGTGC-CGGGTGTCAACTGGAGCCACAAAAGATGCTCCGGGCATATTCCCCTTGCG 786 Query 41121 GGTATTGTATTACGCCTCTCCACCCGAC 41148 ||| |||||||||||||||||||||||| Sbjct 787 GGTCTTGTATTACGCCTCTCCACCCGAC 814 >seq54883 Length=869 Score = 113 bits (124), Expect = 2e-20 Identities = 103/125 (82%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 41025 CTCCTTTGAAGTTTTAGT-TAGCAATCACCAGTTAGTGGCTGGTGATCGGGTGTCAACTA 41083 ||||| || ||||||| | |||| || || ||| |||| | ||||||||||||| Sbjct 747 CTCCTATGGTTTTTTAGTATGGCAACCAGT-GTCAGTAACTGGCGC-CGGGTGTCAACTA 804 Query 41084 GAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCCTCTCCAC 41143 |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 805 GAGCAC-CATAGACGCTCCGGGCATATTCCCCTTGCGGGTCTTGTATTACGCCTCTCCAC 863 Query 41144 CCGAC 41148 ||||| Sbjct 864 CCGAC 868 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 59897 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 59955 ||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 59956 TCCAGCAAGGGCCACCA 59972 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192511105178000