Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq17432 109 5e-19 seq214 105 6e-18 seq669 91.5 1e-13 >seq17432 Length=31749 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||||||||| || |||||| ||||||| |||||||||||| | || ||| ||| Sbjct 23743 AAAATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCCC 23802 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || || || ||| |||||||| ||| | || ||| Sbjct 23803 TCCGACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGAC 23862 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || || || | ||||||||||||| | ||||| ||| | ||||||| Sbjct 23863 CAACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTAC 23922 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || ||||| || | |||||| | || || Sbjct 23923 AACATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCTGAGAGGAGG 23972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || || ||||| || ||||||| || || ||||| ||||| ||| || Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTC 24196 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | ||||| ||||| ||||||||||| |||| ||||| Sbjct 24197 GGACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCA 24256 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 111363 ||| || || || | ||||||||||||| | ||||| | || ||| | | |||||| Sbjct 24257 ACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCT--CTGATTAT 24314 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||||| || || || || ||||| || | |||||| | || || Sbjct 24315 AATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24364 >seq214 Length=17119 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| || ||||| ||| |||| || || ||||| || | || ||| ||| Sbjct 1185 AAAATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAGCCC 1126 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||||| || ||| | ||||| ||| ||| ||||| || ||| | || ||| Sbjct 1125 AGCGATACTATTGAGAATGTAAAGGCAAAGATTCAGGACAAGGAGGGCATACCTCCGGAT 1066 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || || | || | ||| ||||||||||| ||||| | |||| | |||||| Sbjct 1065 CAGCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAGCGATTAC 1006 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||| || || || || ||||| ||| || | ||| | || ||| Sbjct 1005 AACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGAGACTGAGAGGAGGC 955 >seq669 Length=42814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| || || ||||| | ||||| || || ||||| ||||| ||| || Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||| | | | | || || ||| ||| ||||| |||||| |||| ||||| Sbjct 32010 CGATACCATCGAAAACGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCA 31951 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || ||||| | |||||||||||| || || || ||| | | ||||| || Sbjct 31950 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31891 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || |||||||| | ||| || | || || Sbjct 31890 CATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGG 31843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422749496449000