Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq17432 125 5e-24 seq669 100 2e-16 seq214 82.4 5e-11 >seq17432 Length=31749 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| || | ||||| || || || |||||||||||| | || ||| | Sbjct 23742 CAAAATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCC 23801 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | | ||| || ||| || |||||||| | ||| | Sbjct 23802 CTCCGACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGA 23861 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||||||||| |||||||| ||||||||||||||||| ||| | ||||||| Sbjct 23862 CCAACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTA 23921 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||| ||||| || || |||||| ||||| | ||| | |||||||| Sbjct 23922 CAACATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCTGAGAGGAGGA 23973 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG- 21891 |||||||||||| | |||||||| || || || ||||| || ||||| ||| |||| Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGA-GCCGT 24651 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | | | ||| |||||| || ||||||||| | ||| | | Sbjct 24652 CGGACACCATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATC 24711 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 ||||| | |||||||| || ||||||||||||||||| ||| | | || || | Sbjct 24712 AACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATA 24771 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||| ||||| || ||||||||| ||||| | ||| | |||||||| Sbjct 24772 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGA 24821 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG- 21891 |||||| ||||| | || || | || || || || ||||| ||||| ||| |||| Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGA-GCCGT 24195 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | | | ||| ||||| || ||||| ||| | ||| | | Sbjct 24196 CGGACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATC 24255 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 |||||||||| |||||||| ||||||||||||||||| ||| | | ||||| | Sbjct 24256 AACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATA 24315 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||| ||||| || ||||||||| ||||| | ||| | |||||||| Sbjct 24316 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGA 24365 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG- 21891 |||||||||||| | || ||||| || || || ||||| || ||||| ||| |||| Sbjct 24821 AATGCAAATATTCGTGAAGACATTGACCGGAAAGACCATCACTTTGGAAGTGGA-GCCGT 24879 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | || | ||| || ||| || ||||| || | ||| | | Sbjct 24880 CGGACACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAAGAAGGGATTCCTCCGGATC 24939 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | || || | ||||| |||||||||||||| ||||| ||| | |||| |||| Sbjct 24940 AGCAACGATTGATCTTCGCTGGCAAACAACTGGAAGACGGGCGCACTCTTTCCGACTACA 24999 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATT 22065 ||||||| ||||| || || |||||| |||| | || | ||||||||| || Sbjct 25000 ATATTCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGACTCAGAGGAGGATTTT 25053 >seq669 Length=42814 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || |||||||| ||||| ||| || | Sbjct 31842 AATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTC 31783 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||| ||| || || || ||| | ||| | || Sbjct 31782 GGATACCATCGAAAACGTGAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATCA 31723 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||||||||||||| |||||||| |||| || ||| | | |||||||| Sbjct 31722 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31663 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATT 22065 ||||||||||| || ||||| ||| |||| | ||||| |||||||| ||| Sbjct 31662 CATTCAGAAGGAGTCGACTCTCCATTTGGTTCTTCGTTTGAGAGGAGGAAATT 31610 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||||||||| | ||||| | || || || || ||||| ||||| ||| ||| | Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | ||||| ||| ||| || || || || | ||| | || Sbjct 32010 CGATACCATCGAAAACGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCA 31951 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||||||||||||| |||||||| |||| || ||| | | |||||||| Sbjct 31950 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31891 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || || || || || |||||| | || | ||||| |||||||| Sbjct 31890 CATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGGA 31842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||||||| | ||||| | || || || || || || | || || || Sbjct 32526 AAAATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGCCC 32467 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | ||| ||| ||| || ||||| || | ||| | Sbjct 32466 TCTGACACTATCGAAAATGTAAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCGGAT 32407 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | || ||||| |||||||| ||||||| | ||| | | |||||| Sbjct 32406 CAGCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCTCTGATTAC 32347 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| || || |||||| | || | ||||| |||||||| Sbjct 32346 AACATTCAGAAGGAGTCAACCCTTCATTTAGTTCTTCGTTTGAGAGGAGGA 32296 >seq214 Length=17119 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| || | || || || ||||| || ||||| || | || ||| | Sbjct 1186 CAAAATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAGCC 1127 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | ||| ||| ||| || || ||||| ||||| | Sbjct 1126 CAGCGATACTATTGAGAATGTAAAGGCAAAGATTCAGGACAAGGAGGGCATACCTCCGGA 1067 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||| | | |||||||||||||||||| ||||||| | |||| | |||||| Sbjct 1066 TCAGCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAGCGATTA 1007 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || || ||||| || || |||||| |||| Sbjct 1006 CAACATCCAAAAGGAGTCGACCCTTCATTTGGT 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357878874021130