Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq38498 149 5e-31 seq669 113 4e-20 seq214 102 6e-17 seq55267 96.9 3e-15 seq17432 93.3 3e-14 >seq38498 Length=6817 Score = 149 bits (164), Expect = 5e-31 Identities = 277/403 (69%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 37746 TGGGCGCTGATTACTCTTAAAGCGCACGAAAAAGACCGCAGACAATACGTTTATTCGCTT 37805 ||||||| || ||| || || | ||| |||||| | |||| | ||||| || Sbjct 5653 TGGGCGCGGAATACACTGAACACTCACCGGAAAGACAAACGCGAATATCTCTATTCTTTT 5594 Query 37806 AAGGTGTTTGAAAACGCCGACACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTT 37865 || ||| || | || || || ||||| | ||||||||| | ||||| | || | Sbjct 5593 GAGAAGTTAGAGAGGGCTGAGACTCACGACCAGTTGTGGAACTCCGCTCAGAGACAAATG 5534 Query 37866 GTGCGCGAGGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAA 37925 | || || || |||||| | |||||| ||||||||| ||||| || | || Sbjct 5533 ACAAGAGATGGCAAAATGCATGGCTTTATGCGAATGTATTGGGCAAAGAAGATACTCGAG 5474 Query 37926 TGGTCTGATGATGCTCAGACC--GCGCTCAACTACGCCATTTATCTCAATGATAAGTACA 37983 ||| | | | | |||| | |||||| | | ||| ||| | | || ||||||||| Sbjct 5473 TGGACACAA-ACAC-CAGAACAGGCGCTCGAATTCGCTATTCTTTTGAACGATAAGTACG 5416 Query 37984 GCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTAC 38043 |||||||| || || |||||||| || ||||||||| ||||||||||||| || | | Sbjct 5415 AATTGGACGGACGCGACCCCAACGGGTATGTCGGCTGTATGTGGTCTATATGTGGTATTC 5356 Query 38044 ACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACG 38103 ||||| | ||| || | || | | |||||| ||||| |||||||||||||| | Sbjct 5355 ACGATCAGGGATGGGCTGAAAGGCCGGTGTTCGGCAAAATTCGTTACATGAACTACAAGG 5296 Query 38104 GATGTGTTAGGAAGTTTAATGTTAACCATTATATCAACCAATA 38146 |||||| | |||||| |||| || || || || || |||| Sbjct 5295 GATGTGAGCGCAAGTTTGATGTCAATCAATACATTAATAAATA 5253 >seq669 Length=42814 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| || || || | |||||| || ||||||||||||||||||||| | Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || || || ||||| |||||||||| | |||||||||| || Sbjct 32357 AGAGTG-CGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGG 32415 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||||||||| ||| ||| ||| | | | | |||| | ||| Sbjct 32416 AATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCGAC 32475 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | || || || |||||||| || ||||||||||| ||||||||||| Sbjct 32476 CTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTT 32526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| || || |||| ||| || || ||||||||||||||||||||| | Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || || || ||||| ||||| || || | ||| |||||| || Sbjct 31675 AGAGTG-CGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGG 31733 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||||| ||| ||| ||| | | | |||| | || || Sbjct 31734 AATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCAC 31793 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || |||||||| || || ||||| || || |||||| Sbjct 31794 TTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 31842 >seq214 Length=17119 Score = 102 bits (112), Expect = 6e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | |||||||| |||||| || |||||| || ||||||||||| || Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATC-GCT 1014 Query 33961 AATTG-TCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || |||| || ||||| ||||| ||||| |||| |||||||||||| || Sbjct 1015 AAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGG 1074 Query 34020 CACGCTCTCTTTGTCCATAATTTTT 34044 | || ||| |||||| ||| ||| Sbjct 1075 TATGCCCTCCTTGTCCTGAATCTTT 1099 >seq55267 Length=236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 84/99 (85%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||| ||| | ||| || ||||||||||| Sbjct 23 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 81 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | ||||||| || ||||||||||| ||| ||| ||||| Sbjct 82 CGTAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 84/99 (85%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||| ||| | ||| || ||||||||||| Sbjct 23 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 81 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | ||||||| || ||||||||||| ||| ||| ||||| Sbjct 82 CGTAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 120 >seq17432 Length=31749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||| || |||||| |||||||||||||| | Sbjct 23972 CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 23913 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | ||| ||||| ||||| ||||| | ||| || || || Sbjct 23912 AGAGTG-CGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGG 23854 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || |||||||||| ||| || ||| | | ||| | | || | | || Sbjct 23853 GATGCCCTCTTTGTCCTGAATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGAGGGCTCCA 23795 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | || || ||||||||||| | |||||||| || ||||||||||| Sbjct 23794 CCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||| || |||||| ||||| || || || | Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | ||| |||| || | ||| |||||||| || || || ||||| |||||| || Sbjct 24760 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGA 24701 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | |||||||||| |||||| ||| | | ||| | | || | | || Sbjct 24700 ATACCCTCTTTGTCCTGAATTTTCGCCTTCA-CGTTCTCAATGGTGTCCGACGGCTCCAC 24642 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || |||||||| | |||||| || || ||||||||| Sbjct 24641 TTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCATT 24593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396789735388690