Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq54669 203 3e-47 seq40599 98.7 1e-15 >seq54669 Length=12211 Score = 203 bits (224), Expect = 3e-47 Identities = 306/435 (70%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 135747 TGGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAAT 135806 ||||||||| ||||| || | || ||| | || |||| ||| | |||||||| Sbjct 11777 TGGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAAT 11836 Query 135807 CTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAA 135866 ||||| ||||| || | |||||||| || |||||||| || || || || ||||| Sbjct 11837 TTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAA 11896 Query 135867 CACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCC 135926 || | |||| |||| | |||||||||||||| || || | | || || || || || Sbjct 11897 TACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACC 11956 Query 135927 ACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGAT 135986 ||| | ||| ||||| || || || || || ||||||||||| ||||| | || || || Sbjct 11957 ACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAAT 12016 Query 135987 AACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGCC 136046 | || |||||| | |||||||||| | || | |||| ||| || || || Sbjct 12017 ACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGGATGCGACC 12076 Query 136047 AGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTTC 136106 ||| || ||||| || || || |||| || ||| || |||||||| ||||||| | Sbjct 12077 AGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCTTGCTGTGGC 12136 Query 136107 GTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAATTGGCGTGT 136166 ||||| | ||| ||| ||| ||| |||| ||||| || ||||||||||| || Sbjct 12137 ATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGT 12196 Query 136167 TGGGGTACGCACACC 136181 || ||||| ||||| Sbjct 12197 AGGCGTACGTACACC 12211 >seq40599 Length=28396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 53325 GATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAG 53384 |||| ||||||||||||| || || || |||||||| ||| ||| | |||||| Sbjct 4625 GATTTTGTAAAGGTACGCGTAATCACATCTCGCTGCTGTTCTTTAGTTAATGAATTGAAA 4566 Query 53385 CGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACA 53444 || || || || ||||| || || || |||||||| || || | || |||| || | | Sbjct 4565 CGGACGGCATAGCCAGACACTCGTATCGTAAGCTGTGGATATTCTTCTGGATTATCCATA 4506 Query 53445 GCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 || | ||| ||||| ||| | || || |||| ||| |||||||| || ||||| || Sbjct 4505 GCCTTCAGTAACATCTCTTGATTCATGACATTAAGATTTAAATGCTGTCCCCCTTCAAC 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525165858426000