Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq55013 172 2e-38 seq22457 131 7e-26 seq36628 113 2e-20 seq39681 111 6e-20 seq54883 105 3e-18 seq11509 100 1e-16 >seq55013 Length=475 Score = 172 bits (190), Expect = 2e-38 Identities = 271/394 (69%), Gaps = 33/394 (8%) Strand=Plus/Minus Query 6758 ATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCGAGACGGGCACAC 6817 || ||||| ||||| || |||||| || || ||||| || || || | |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 6818 TGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCCCCGTGATT 6877 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 6878 TCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACG 6937 || ||| || ||||| ||| | || || || Sbjct 286 ------------------------GG---GCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 6938 CAGATCGGATGATTACAGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATTGTCCTGC 6997 | | ||||||| | ||| || ||||| || ||||| ||||||| | || ||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 6998 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACG 7057 | ||| |||||||||||| || | ||||||||| |||||||| ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 7058 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCAC 7117 || || ||||| ||||| ||| ||||| || || ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 7118 GGATTAAGGCCGTACTGGTTGGCGACGATCAGCA 7151 ||||| ||||| || || |||| || || |||| Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCA 43 >seq22457 Length=815 Score = 131 bits (144), Expect = 7e-26 Identities = 119/144 (83%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 62785 TTGACTGGTCATGATGAC--CTCCTTATTTGTTT-AGTTTATAACCGCCAGTTAGTAGCT 62841 |||| | | ||||||| |||||| | ||||| ||| | | ||||||| ||||||| Sbjct 674 TTGAGTCGCCATGATGGGTGCTCCTTTTGTGTTTTAGTGTC--AGCGCCAGTCAGTAGCT 731 Query 62842 GGCGGTCGGGTGTCAACTG-AGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTG 62900 || | ||||||||||||| ||||| | |||| |||| ||||||||||||||||||||| Sbjct 732 GGTGC-CGGGTGTCAACTGGAGCCACAAAAGATGCTCCGGGCATATTCCCCTTGCGGGTC 790 Query 62901 TTGTATTACGCCTCTCCACCCGAC 62924 |||||||||||||||||||||||| Sbjct 791 TTGTATTACGCCTCTCCACCCGAC 814 >seq36628 Length=791 Score = 113 bits (124), Expect = 2e-20 Identities = 103/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 19902 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGAGGCGCAGCCCG 19960 ||||||||| |||| || ||| ||| || ||||||||||||||||||||||| || Sbjct 602 GGGTTAGTTAATAAACCA--CCACTCACCTTATTCTCTGGACAGAACGAGGCGCAGCACG 545 Query 19961 TCACGCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAGACTGGAAGACTG 20020 |||| | |||||||| ||||| ||||||| ||||| |||||||||| | ||||| || Sbjct 544 TCACACCAAAATGCTAGAAACCAATCAGGCATGGGAAGTGTTCGAAAAGTTAGAAGATTG 485 Query 20021 CTATTTCA 20028 ||||||| Sbjct 484 TTATTTCA 477 >seq39681 Length=3370 Score = 111 bits (122), Expect = 6e-20 Identities = 103/128 (80%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 19902 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGAGGCGCAGCCCG 19960 ||||||||| |||| | || ||| ||| || |||| |||||||||||||||||| || Sbjct 28 GGGTTAGTTAATAAACACACCA-CTCACCTTATTCTCTAGACAGAACGAGGCGCAGCACG 86 Query 19961 TCACGCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAGACTGGAAGACTG 20020 |||||| |||||||| ||||| ||||| || ||||| || ||||||| | ||||| || Sbjct 87 TCACGCCAAAATGCTAGAAACCGATCAAGCATGGGAAGTATTCGAAAAGTTAGAAGATTG 146 Query 20021 CTATTTCA 20028 ||||||| Sbjct 147 TTATTTCA 154 >seq54883 Length=869 Score = 105 bits (116), Expect = 3e-18 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 62832 GTTAGTAGCTGGCGGTCGGGTGTCAACT-GAGCCAAATAAGAAGCTCTGGGCATATTCCC 62890 || |||| |||||| |||||||||||| |||| || ||| |||| |||||||||||| Sbjct 777 GTCAGTAACTGGCGC-CGGGTGTCAACTAGAGCACCAT-AGACGCTCCGGGCATATTCCC 834 Query 62891 CTTGCGGGTGTTGTATTACGCCTCTCCACCCGAC 62924 ||||||||| |||||||||||||||||||||||| Sbjct 835 CTTGCGGGTCTTGTATTACGCCTCTCCACCCGAC 868 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 22825 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 22883 ||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 22884 TCCAGCAAGGGCCACCA 22900 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202599978041020