Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq214 161 7e-35 seq669 127 1e-24 seq17432 122 6e-23 >seq214 Length=17119 Score = 161 bits (178), Expect = 7e-35 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 ||| |||| || ||| | || ||||||||||| || || ||||| |||||||||||||| Sbjct 955 GCCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCT 1014 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| |||| |||||||||||||||||||||| | ||||| ||||| || || || Sbjct 1015 AAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGG 1074 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 || || |||||||| ||| ||||| |||||| | || ||||||||||| || | Sbjct 1075 TATGCCCTCCTTGTCCTGAATCTTTGC-CTTTACATTCTCAATAGTATCGCTGGGCTCCA 1133 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 | || | || ||||| ||||| |||| || || || || |||||||| || ||| Sbjct 1134 CCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTTGGAA 1189 >seq669 Length=42814 Score = 127 bits (140), Expect = 1e-24 Identities = 175/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||||||||||||||| || || || || ||||||||||| | Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||||||||| |||||||| || ||||||| | ||| || || ||| Sbjct 32357 AGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGGA 32416 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| ||| ||||| |||||| |||| ||||| || || || Sbjct 32417 ATGCCTTCTTTGTCCTGAATCTTTGC-CTTTACATTTTCGATAGTGTCAGAGGGCTCGAC 32475 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT-TGAAATAA 15187 || | || || || || || || || ||||| ||||| |||||||| || || ||||| Sbjct 32476 CTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTTCTGTAATAA 32535 Query 15188 A 15188 | Sbjct 32536 A 32536 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | |||||||||||||| || |||||||| ||||||||||| | Sbjct 31843 CCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAG 31902 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| ||||| |||||||| || | || | | |||||| || ||| Sbjct 31903 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31962 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || || |||| || |||||| || || Sbjct 31963 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACGTTTTCGATGGTATCGGAGGCCTCCAC 32021 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || || ||||| || || |||||||| Sbjct 32022 TTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| ||||| || || || || || || ||||||||||| | Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| ||||| |||||||| || | || | | |||||| || ||| Sbjct 31675 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31734 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || || |||| || ||||| | || || Sbjct 31735 ATACCTTCCTTGTCCTGAATCTTTGC-CTTCACGTTTTCGATGGTATCCGAAGCCTCCAC 31793 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || || || || || || || || || ||||| Sbjct 31794 TTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCAT 31841 >seq17432 Length=31749 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || ||||| |||||||||||| |||| | | |||||||| Sbjct 23954 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCTTCT 23895 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| || | |||| | |||||||||| || || || || ||||| | Sbjct 23894 AGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCCTCTTTGTCCTGA 23835 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| || || || | |||||||||||| Sbjct 23834 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTAATGGTTTTT 23775 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||| ||||| || ||||||||||| || Sbjct 23774 CCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | || ||||||||||| || || ||||| ||||| |||||| Sbjct 24592 CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAA 24533 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||| || |||||||| ||| | |||| | ||||||||| || Sbjct 24532 AGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGG 24473 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| || || | || || || ||| || || Sbjct 24472 ATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACC 24413 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || |||||||| || ||||| |||||||| Sbjct 24412 TCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || ||||| || ||||| ||| ||| | | | ||||||| Sbjct 25030 ACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGAGTGCGCCCGTCTTCC 24971 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | ||||| || || || || ||||| ||||| ||||| | Sbjct 24970 AGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTCTTTGTCTTGA 24911 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || |||||| | || || || || || || || || || ||||| || Sbjct 24910 ATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCACTTCCAAAGTGATGGTCTTT 24851 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || |||||||| Sbjct 24850 CCGGTCAATGTCTTCACGAATATTTGCAT 24822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357146577238325