Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq39681 284 3e-72 seq11454 250 6e-62 seq55895 178 3e-40 seq54647 82.4 2e-11 >seq39681 Length=3370 Score = 284 bits (314), Expect = 3e-72 Identities = 647/947 (68%), Gaps = 66/947 (7%) Strand=Plus/Minus Query 29669 GCTGTTTGATCTCCGCTAATACGGTATCGATATTCTCACGCTTGCGTAAAATTCGCTTAA 29728 ||| || ||||| |||| ||| | ||| || || || ||||| | || ||| | | Sbjct 3077 GCTCTTGCATCTCTGCTAGTACCATGTCGGCATCTTCCCGTTTGCGCAGTATACGCCTGA 3018 Query 29729 TCGCCTGCTTTTCTGCGTCATTGATAA--TCT----GGCGCAATGTCTCAGTGATATAGT 29782 | | ||||||||||||| | | || | ||| |||| || || |||| Sbjct 3017 TAGTCTGCTTTTCTGCGGCGTAAATGACGTCTTTAAGGCGA------TCGGTAATATTCA 2964 Query 29783 AAATGCGTCTACACTCATCAGTCATTAACGGTATATGCTCTACCTGAAAACGCTCAGGGG 29842 | || || | ||||| || | |||| ||||| || || | ||| ||||| || | Sbjct 2963 AGATACGCCGGCACTCTTCGGCAATTATCGGTAATTGGCGCACTTCAAAGCGCTCTGGAG 2904 Query 29843 AGGGTGTGCCCGTCACTTCACGTAGCGCCAGCCACACCGCATTACTCCATGAACGCTCAA 29902 || | || || | || ||| | || |||| | | |||| ||||| || |||| | Sbjct 2903 TGGAGATCCCTGTAATTTGACGCAAAGCATGCCAAATCCCATTGCTCCAAGACTGCTCGA 2844 Query 29903 ATCGAAAGCCGTTTGTCATACACCAAACTAAATGTGTTAAATTACGTGTGTCTGAATGGC 29962 | | ||| || || | ||| ||||| ||| | | | |||| || || ||||| Sbjct 2843 ACCTAAAACCATTACTGATAGCCCAAATTAAGCGAGCAAGATTATTAGTATCACGATGGC 2784 Query 29963 TAAAACGCTCTACGGCTTTCGATTGGGGTTGGGGAGTAAAGCTGGAGGTTTGATTAACGG 30022 ||| | || || |||||||||||| || | || ||| | | Sbjct 2783 TAACCAGTTCG------TTTGATTGGGGTTGG----TATTG-----GG---GATAACCCA 2742 Query 30023 CTTGTTTATCGAGGATATCTAGCACCCATTTTCTGAATTCTTTTGCTATATGTGTACGGG 30082 |||| |||| ||||||||||||||||| | ||||||||||| || | | |||| |||| Sbjct 2741 CTTGCCTATCCAGGATATCTAGCACCCACTGCCTGAATTCTTTCGCAACAAGTGTGCGGG 2682 Query 30083 CAAACATAGCGATTAGGTGTGCACCTCTTAGAGAAAAGATGCGAACTGGCA--TTCTAAC 30140 ||||||||||||| || || ||||| | || || || | ||| | || || ||| Sbjct 2681 CAAACATAGCGATAAGATGAGCACCGCGGAGGGAGAAAAGTCGAGTTT-CAGTTTGTAAA 2623 Query 30141 CGTTCC-----CGTT--TTTC-TAACGACGCCCAAATTGACCGTCGTTGTCATACATTCG 30192 || |||| |||| | | | |||||||||| | | ||||| | | Sbjct 2622 TTATCGTAAGTCGTTGATTTCGTCGAGGGGGTCAAATTGACCACCCGGGACATACCTG-G 2564 Query 30193 GAAAACTCATCTTTATTGCGATTG--AAAATTTTTGTTA-CTGCATCCGTTTCTGTATAT 30249 |||| | |||||| | || | | || | |||| |||| | ||||||||| Sbjct 2563 TAAAAAT--TCTTTAGAGTGACGGGCATAAATACGGTTAACTGCTTTGTCGTCTGTATAT 2506 Query 30250 TCCAGTGCTCTAGCAAGTTCAGCAGAAGTAAACCAAATTTCTCTGTTATGGAAAATAGTT 30309 || || ||| | || | |||||| ||||| | ||||||||| | || ||| | |||||| Sbjct 2505 TCAAGCGCTTTTGCTAATTCAGCTGAAGTGAGCCAAATTTCGCCATTGTGGGAGATAGTT 2446 Query 30310 TCAAGAACAGTATTACGGAAAATTAAAGTAGTCATAGTAATGATTTCCTTGTTATTTAAG 30369 ||||| | |||| |||||| |||| || |||||||| ||| |||| ||||| | | Sbjct 2445 TCAAGCTCGATATTGCGGAAAGTTAACGTTGTCATAGTGATG--TTCCCTGTTAGATTGG 2388 Query 30370 GATAATCACCACCTTTGAGGT--CAATCT---TGGGTGGTGAACTGGACGAGGTT-GACC 30423 | ||||||| | | ||||| ||||| | || || |||||| || |||| || | Sbjct 2387 AAGAATCACCGC--TAGAGGTTCTAATCTCAATTGGCGGCGAACTGAACAGGGTTAGAAC 2330 Query 30424 TTACCGGCTAACAAGGATCCCGGCGAGCCTTACGGCTCCCCCATCCAGCCCACCATTGAT 30483 |||||||||||||||| |||||| | |||||||| | ||||||||||| |||||||| | Sbjct 2329 -TACCGGCTAACAAGGA-CCCGGCCAACCTTACGGTTGCCCCATCCAGCTCACCATTG-T 2273 Query 30484 TCTTGATATG-GCAGACTGACGCATaaaaaaaCACGCTGTCGGCGTGCTGTGCGCCTTGT 30542 || |||| | | ||||| ||||||||||||||||| ||||||||| |||||| ||| Sbjct 2272 TC-TGATGGGCGAGGACTG-CGCATAAAAAAACACGCGGTCGGCGTGTCATGCGCCCTGT 2215 Query 30543 TAGTTACATCAGGAGGTC-AATCCCGACATCTGATTTTGCAGATGCA 30588 ||| ||| | || | || |||||||||||||||||||||||||||| Sbjct 2214 TAGATAC--CCGGGGTTCTAATCCCGACATCTGATTTTGCAGATGCA 2170 >seq11454 Length=2477 Score = 250 bits (276), Expect = 6e-62 Identities = 416/590 (71%), Gaps = 37/590 (6%) Strand=Plus/Minus Query 30014 GATTAACGGCTTGTTTATCGAGGATATCTAGCACCCATTTTCTGAATTCTTTTGCTATAT 30073 ||||| | |||| |||||||||||| || | |||| |||| ||||| ||||||| Sbjct 1992 GATTACCAACTTGCCGATCGAGGATATCCAGTATCCATATTCTAAATTCCTTTGCTACTG 1933 Query 30074 GTGTACGGGCAAACATAGCGATTAGGTGTGCACCTCTTAGAGAAAAGATGCGAA--CTGG 30131 | ||||| |||| ||| |||||| || ||||| | || || ||||| || |||| Sbjct 1932 GCGTACGAGCAAGCATGCCGATTAAATGGGCACCGCGGAGGGAGAAGATTCGGGTCCTGG 1873 Query 30132 CATTCTAACCGTTCCCGTTTTTCTAACGACG--CCCAAATTGACCGTCGTTGTCATACAT 30189 | || | ||||| ||| | | | | | || ||| | |||| Sbjct 1872 CCTTGAGA---TTCCC----------CGAGGTACTCGATTCGAGTACCGTGGACATAGCA 1826 Query 30190 TCGGAAAACTCATCTTTATTGCGATTGAAAATTTTTGTTACTGCATCCGTTTCTGTATAT 30249 || | ||| || || | | || |||| | || || || | | | || |||| Sbjct 1825 TCTGTAAATTCCTCAGAGTACTGGTTATAAATCATAGTAACGGCCTTGGGATTTGAATAT 1766 Query 30250 TCCAGTGCTCTAGCAAGTTCAGCAGAAGTAAACCAAATTTCTCTGTTATGGAAAATAGTT 30309 | ||| ||| | || |||||||| ||||| ||||| |||| | |||||| | ||| || Sbjct 1765 TGCAGCGCTTTTGCTAGTTCAGCTGAAGTGAACCAGATTTGGCCATTATGGTAGATAATT 1706 Query 30310 TCAAGAACAGTATTACGGAAAATTAAAGTAGTCATAGTAATGATTTCCTTGTTA--TTTA 30367 ||||| |||||| |||||| |||| || ||||||| |||| |||| || ||| Sbjct 1705 TCAAGCTGAGTATTGCGGAAAGTTAACGTTGTCATAGC---GATTCCCTTTGTAGCTTTT 1649 Query 30368 AGGATAATCACCACCTTTGAGGT--CAATCT------TGGGTGGTGAACTGGACGAGGTT 30419 ||||||||| ||||| ||||| ||| || | ||||| ||||| || |||| Sbjct 1648 AGGATAATCGCCACCAA-GAGGTGTCAAGCTCTAAATTTGGTGGCAAACTGAACAGGGTT 1590 Query 30420 GACCTTACCGGCTAACAAGGATCCCGGCGAGCCTTACGGCTCCCCCATCCAGCCCACCAT 30479 ||| ||||||||| ||||| |||||| | |||||||| | ||||||||||| |||||| Sbjct 1589 GACACTACCGGCTACAAAGGA-CCCGGCCAACCTTACGGTTGCCCCATCCAGCTCACCAT 1531 Query 30480 TGATTCTTGATATGGCAG-ACTGACGCATaaaaaaaCACGCTGTCGGCGTGCTGTGCGCC 30538 || | | ||| ||||| ||| | ||| ||||||||||||| |||||||||| |||||| Sbjct 1530 TGTTCC--GATG-GGCAGGACTCATGCACAAAAAAACACGCTCTCGGCGTGCTATGCGCC 1474 Query 30539 TTGTTAGTTACATCAGGAGGTCAATCCCGACATCTGATTTTGCAGATGCA 30588 || ||| ||| | || ||||| ||||||||||||||||||||||||| Sbjct 1473 TTTGTAGATACC-CGGGGTGTCAAGCCCGACATCTGATTTTGCAGATGCA 1425 >seq55895 Length=771 Score = 178 bits (196), Expect = 3e-40 Identities = 217/282 (77%), Gaps = 18/282 (6%) Strand=Plus/Plus Query 30318 AGTATTACGGAAAATTAAAGTAGTCATAGTAATGATTTCCTTGTTATTTAAGGATAATCA 30377 |||||| |||||| |||| || |||||||| || | | || | | |||| ||||||||| Sbjct 303 AGTATTGCGGAAAGTTAACGTTGTCATAGTGATTCTCTTCTAGCTTTTTA-GGATAATCA 361 Query 30378 CCACCTTT-GAGGTCAATCTT-----GGGTGGTGAACTGGACGAGGTTGACCTTACCGGC 30431 ||||| || | ||||| ||||||||||| | ||| ||| | |||||||| Sbjct 362 CCACCGAGAGACGCTAATCTCTTTTGGGGTGGTGAACCGAACGGAGTTAGCGTTACCGGC 421 Query 30432 TAACAAGGATCCCGGCGAGCC-TTACGGCTCCCCCATCCAGCCCACCATTGATTCTTGAT 30490 || ||||| |||||| | || |||||| | ||||||||||| |||||||| ||| |||| Sbjct 422 TAGAAAGGAACCCGGCCAACCTTTACGGTTGCCCCATCCAGCTCACCATTG-TTC-TGAT 479 Query 30491 ATGGCA--GACTGACGCATaaaaaaaCACGCTGTCGGCGTGCTGTGCGCCTTGTTAGTTA 30548 | || ||||| ||||| |||||||||||| |||||||||| |||||||| ||| | Sbjct 480 -GGACAAGGACTG-CGCAT-AAAAAACACGCTCTCGGCGTGCTATGCGCCTTTCTAG--A 534 Query 30549 CATCAGG-AGGTCAATCCCGACATCTGATTTTGCAGATGCAA 30589 || | || | | ||| |||||| |||||||||||||||||| Sbjct 535 CACCCGGAACGCTAATTCCGACACCTGATTTTGCAGATGCAA 576 >seq54647 Length=1020 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 30029 TATCGAGGATATCTAGCACCCATTTTCTGAATTCTTTTGCTATATGTGTACGGGCAAACA 30088 |||| ||||||||||||||||| | ||||||| ||| || | | || |||||||||| Sbjct 567 TATCCAGGATATCTAGCACCCACTGCCTGAATTTTTTCGCAACCGGCGTGCGGGCAAACA 508 Query 30089 TAGCGATTAGGTGTGCACCTCTTAGAGAAAAGA 30121 ||||||||| ||| ||||| | || || |||| Sbjct 507 TAGCGATTAAGTGAGCACCCCGGAGGGAGAAGA 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127367521729810