Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11840 123 3e-23 >seq11840 Length=1854 Score = 123 bits (136), Expect = 3e-23 Identities = 431/659 (65%), Gaps = 38/659 (6%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||| || || | ||||| ||||| | |||||||||| || || || || || || || Sbjct 758 ATATATATTACTAGTGTAGGGCTCTATCGACTCATTGTTGCCTAATATCTGTGCCGTAGA 817 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT--GCG- 116018 || || ||||| || |||| ||| || || || | | || || | ||| Sbjct 818 AGCGGTCGGCATCGGAGCCAACGTAAGACTATTACGTA-------CTCCATATTTGGCGA 870 Query 116019 ----TTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATC 116072 |||||| || || |||| | | |||| || ||| | | ||||||||||| Sbjct 871 TCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAG--TTGGCGTTCGGTCCCACATATC 928 Query 116073 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 | || || ||||||| || | ||||| || ||| |||||||||| || ||| | Sbjct 929 GTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCATATGTCTCATAAGGTCCCAACTC 988 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 | |||||||| | || ||||| | || ||| ||| || ||||||||||| | Sbjct 989 TTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAATATATGGTCTCAAAAATCTGGAT 1048 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGACGGCACAA-AATAAATACA-T 116248 ||| | | || || || ||| | |||| | |||| || || |||||| ||| | Sbjct 1049 ATTAAGTCGTTTCGCTTCT--GGACTTTCAAAGGGCTGACG-CATAAGAATAAA-ACAGT 1104 Query 116249 CCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGG 116308 | || | ||| || || || | || || || || |||||| ||||||| || | | Sbjct 1105 CGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTCTTATTAGAG---CGCTCTG 1161 Query 116309 TCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 116365 | ||| || ||||| | || || || | |||| |||||| | |||| ||| | Sbjct 1162 TTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGATTTCTTGTGATAACTT 1221 Query 116366 TTGTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCA-TTGACATACT 116422 | | | ||| | || || | |||| || || || || ||| ||||| | Sbjct 1222 TAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGC---TCCCTTTTGTTGACGAATC 1278 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 | | || |||||||||| ||| || || | | ||||||| || | |||||| | Sbjct 1279 GATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTCATCTTTGGACGAGTACTCAA 1338 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 | ||||| || || || || || | ||||||||| ||||| || | ||||||||||||| Sbjct 1339 TTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAAATTTTGTTGATTTGACTTT 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613075099210200