Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17432 89.7 4e-13 seq214 87.8 1e-12 >seq17432 Length=31749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| ||||||||||| | ||| || ||||| ||||||||||| | Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | |||||| || |||| || | | ||| ||||||| || Sbjct 24304 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGA 24245 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | || | | ||||| | ||||| Sbjct 24244 ATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCACT 24185 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||||||||| || || || | ||| || ||||| |||||||| Sbjct 24184 TCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 >seq214 Length=17119 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/236 (70%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| |||| || | ||| |||||||| | || || ||||| || || |||||| Sbjct 954 CGCCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCG- 1012 Query 39551 CCAAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | || | |||| || || |||||||| || |||| || || |||||||||||| Sbjct 1013 -CTAA--GAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCC 1069 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCG 39663 | |||| ||| || ||||| | | | |||| |||| || || || | | ||| | Sbjct 1070 GGAGGTATGCCCTCCTTGTC-CTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGG 1128 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || | ||| || || |||||||| || || || |||||||| ||||| Sbjct 1129 C--TCCACCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCAT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347131059667385