Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq54669 167 3e-36 >seq54669 Length=12211 Score = 167 bits (184), Expect = 3e-36 Identities = 296/429 (69%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 144864 GGACTAAACAGAGTAATGTAATCATTCTTACCGAAACGTTCCATCATCAGGTCATTCAAC 144923 |||||||| ||||| || | || || || | ||||| | ||| | | ||| | Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 144924 TGGATTCCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGA 144983 || | ||||| |||||||| |||| ||| || || ||||| || ||||||||| | Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 144984 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 145043 || | ||||||||| | || |||||||| | ||| || | || || || || ||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 145044 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 145103 || | || ||||| ||||| ||||| || |||||||| || ||||| | || |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 145104 ACACCGGTATGTTTGACTTCACCCATGCC-AATACGAGAACCTTCAGCACGAATCATACC 145162 ||||||||| ||||||| ||| | ||| | | ||||| ||||| || ||| Sbjct 12018 CAACCGGTATGAAAAGCTTCACC-ATGACGAATTCCACTACCTTGCGCACGGATGCGACC 12076 Query 145163 AACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTT 145222 | | || |||||||| || || || | |||| |||| || || | | | || || Sbjct 12077 AGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCTTGCTGTGGC 12136 Query 145223 GTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGT 145282 || ||||| | || ||| || ||| || | |||||||| ||||||||||| || Sbjct 12137 ATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGT 12196 Query 145283 CGGTGTACG 145291 || ||||| Sbjct 12197 AGGCGTACG 12205 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 142866 AATGTACTGGGTGCCTTTAAGGTGGAGCTGTTCATCACGTGCAATGAACTTCATAATCTT 142925 ||| | ||| || || ||| || ||| ||||||||| || || ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 142926 AGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCGAAAGATAC 142985 ||||||||||||||| | || || |||| | || ||| | ||| || ||| || Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC--AGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 142986 ATAAAAACGAATAGCTTCTAGGGCGTTGA 143014 |||||| |||| |||||||| || |||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATTGA 9852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550693466340600