Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq54669 219 5e-52 seq11509 100 3e-16 seq40599 95.1 1e-14 >seq54669 Length=12211 Score = 219 bits (242), Expect = 5e-52 Identities = 317/447 (71%), Gaps = 3/447 (1%) Strand=Plus/Minus Query 41164 GGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCTGGTGATTCT 41223 ||||| ||||| ||||| || || || | |||||| | || |||| ||| || | Sbjct 12211 GGTGTACGTACGCCTACCCGCCAATTTAGCTCTTGTGTATTGATAGAATGTGGGGACAGT 12152 Query 41224 CTGGGTTCTCTGAACGCTGTTACGTCCGCGATCGTGAAATATATCTCTCAACGTGCGGGT 41283 ||| |||| | || || | ||| ||| | |||||| | || || || ||||| Sbjct 12151 TTGGATTCTATCAATGCCACAGCAAGCGCAATCATAAAATATGTTTCGCAGCGCGCGGGG 12092 Query 41284 ATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCA 41343 || ||| | || || || | ||| || || ||| ||| ||| ||||||||| Sbjct 12091 ATTGGTATTAATGCTGGTCGCATCCGTGCGCAAGGTAGTGGAATTCGTCATGGTGAAGCT 12032 Query 41344 GTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCTTGTTCC 41403 | ||||| || ||| ||||| | |||||| ||||||| ||||| ||||||||||| Sbjct 12031 TTTCATACCGGTTGTATTCCGTTTTATAAACACTTTCAGACTGCGGTAAAATCTTGTTCT 11972 Query 41404 CAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTT 41463 || || || || ||||||||||||||||| | | || ||| | |||||| | || | Sbjct 11971 CAAGGAGGTGTGCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAGAGATA 11912 Query 41464 GAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTG 41523 ||||| ||| |||| | |||||||||||||| |||||||| || ||| |||| || || Sbjct 11911 GAAAATCTGTTGGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCCATATG 11852 Query 41524 GACTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATC 41583 || || || ||||| |||| | || |||||| |||||||| | || ||||| | || Sbjct 11851 GATTACGGGGTACAAATTAATAAATTTATGTATCAGCGTTTAGTAAAAAACGAAGAGATA 11792 Query 41584 ACTCTGTTCAGCC---CTGACGTTGCG 41607 ||||| || || | |||||||| || Sbjct 11791 ACTCTATTTAGTCCATCTGACGTTCCG 11765 >seq11509 Length=51200 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 49781 GGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCGAA 49840 ||||| |||||| | ||||||||||| | ||||||||||||| ||| ||||||||||| Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 49841 TCCAGCAGGGGCCACCAA 49858 |||||||||||||||||| Sbjct 31987 TCCAGCAGGGGCCACCAA 32004 >seq40599 Length=28396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 51371 ATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATT 51430 |||||||| |||| |||||| | ||||| || ||||| |||||||| || |||||||||| Sbjct 4514 ATCCAGAAGAATATCCACAGCTTACGATACGAGTGTCTGGCTATGCCGTCCGTTTCAATT 4573 Query 51431 CACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACA 51477 || | ||| ||||| ||||| || || || | || ||||||||| Sbjct 4574 CATTAACTAAAGAACAGCAGCGAGATGTGATTACGCGTACCTTTACA 4620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565195245357600