Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11840 152 6e-32 seq28432 95.1 1e-14 >seq11840 Length=1854 Score = 152 bits (168), Expect = 6e-32 Identities = 444/672 (66%), Gaps = 24/672 (4%) Strand=Plus/Plus Query 105907 AAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTC 105966 ||||||||| | |||| || | ||| || || | |||||||| || | | || Sbjct 731 AAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATCGACTC 790 Query 105967 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 106026 ||| || || || || ||||| || || || || ||||| || |||| | |||||| || Sbjct 791 ATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGACTATT 850 Query 106027 ACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG 106084 ||| | || | || ||| |||||| || | |||| | | |||| || | | Sbjct 851 ACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAGTTGG 910 Query 106085 GTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAAT 106144 ||| ||||||||||| ||||||| | |||| || || ||||| ||| || Sbjct 911 CGTTCGG--TCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCATAT 968 Query 106145 GTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATAC 106204 |||||||| | || ||| |||||||||||| || ||||||| | ||| ||| Sbjct 969 GTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAATAT 1028 Query 106205 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGTAG 106261 ||||| ||||| || | ||| | || ||| |||| | ||||| | | | Sbjct 1029 ATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCT---TCTGGACTTTCAAA-GGGCTG 1084 Query 106262 CGGCACAA-AATAAATACA-TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTC 106319 ||| || |||||| ||| || || | ||| ||||| || | ||| || |||| ||||| Sbjct 1085 ACGCATAAGAATAAA-ACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTC 1143 Query 106320 GCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||||||| ||| | || || || ||||| | || |||||||| | | Sbjct 1144 TCTTATTAGA---GCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTAT 1200 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 106436 | |||||| | || | || || | | ||| | ||||| || |||| || | | Sbjct 1201 TGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGCT 1260 Query 106437 TCTCTTCATTGAC--ATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 | || ||||| || || || || ||||| ||||||||||| || || |||| Sbjct 1261 CCCTTTTGTTGACGAATCGATTCAAA--GCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||| || | |||||| | |||||||| || ||||| || | |||||| || ||||| Sbjct 1319 ATCTTTGGACGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAA 1378 Query 106555 ATTCTTTTGGTT 106566 ||| | ||| || Sbjct 1379 ATTTTGTTGATT 1390 >seq28432 Length=45163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 198/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| ||||| || || | ||||| ||| | | ||| ||||| || || Sbjct 29835 ACGATCAAAACGACCAGGGCGCAACAGCGCAGGATCTAAAACATCTGGTCGATTGGTGGC 29776 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || ||||||| ||| ||| || | ||||| ||||||||||| || | ||||| Sbjct 29775 AGCAATGACAATAATCCCTTCTTTACCTTCAAATCCATCCATCTCAACTAACATCTGGTT 29716 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9368 | ||| || || |||||||| | || | | | | || |||| ||| || || Sbjct 29715 TAAAGTCTGCTCGCGTTCATCGT--GCCCCCCTCCTAATCCGGCACCGCGCTGACGACCT 29658 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACA--TGGTTGATT--TTCGCGGGCGATTTC 9424 || || ||||| |||||||| || | |||||| || | || || || | ||| Sbjct 29657 ACCGCGTCAATTTCATCAATAAAAATAATACAAGGGGCCGCTTTCTTTGCTTG----TTC 29602 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| | ||||||||| | || |||||||| ||||||||||| ||||| Sbjct 29601 AAACATATCGCGAACACGAGAAGCCCCCACACCTACAAACATCTCTACAAA 29551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589565269147800