Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17432 183 7e-41 seq669 152 1e-31 >seq17432 Length=31749 Score = 183 bits (202), Expect = 7e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| || ||||||| |||||| | ||| ||||| | ||| Sbjct 24568 TGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAAAGAGTGCGCCCGTCTTCCAACTGT 24509 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| |||| ||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 24508 TTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGGATGCCTTCTTTATCTTGGATTTTG 24449 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||| || ||||| |||||||| | || ||||| ||| Sbjct 24448 GCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTTATGGTTTTTCCGGTC 24389 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | ||||||| Sbjct 24388 AGAGTCTTAACAAAGATTTGCATT 24365 Score = 181 bits (200), Expect = 2e-40 Identities = 163/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| |||||||||| ||||| | || ||||| || || Sbjct 23948 TGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCTTCTAGTTGT 23889 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| |||| |||||||| ||||| ||||| |||||||| ||||| || Sbjct 23888 TTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCCTCTTTGTCCTGAATCTTG 23829 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||| || ||||| |||||||||| || ||||| ||| Sbjct 23828 GCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTAATGGTTTTTCCGGTC 23769 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || ||||| ||||| | |||||||| Sbjct 23768 AACGTTTTCACGAAAATTTGCATTT 23744 Score = 181 bits (200), Expect = 2e-40 Identities = 174/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||| | || | ||||| || ||||| |||||||||||||| |||| |||||| Sbjct 25043 TCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGAGT 24984 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| || || || || |||||||| | |||||| || || |||||||| || Sbjct 24983 GCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCC 24924 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||| || ||| || ||||| ||||||||||| |||||||| | Sbjct 24923 TTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCACTTCCAA 24864 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| ||||| || || ||||| | ||||||| Sbjct 24863 AGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCATT 24821 Score = 179 bits (198), Expect = 8e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||||||||| || || | || |||| || ||||| || || Sbjct 24796 TGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAGAGTGTTCGGCCGTCTTCTAGTTGT 24737 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||||||||| || ||||| || |||||||| || |||||||| |||||||| Sbjct 24736 TTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGAATACCCTCTTTGTCCTGAATTTTC 24677 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||||||||||||||| |||||||| | || | |||||||| ||| Sbjct 24676 GCCTTCACGTTCTCAATGGTGTCCGACGGCTCCACTTCCAAAGTGATGGTCTTTCCGGTC 24617 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 24616 AATGTTTTGACGAATATTTGCATT 24593 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||||||||| ||||| | || |||| || ||||| || || Sbjct 24340 TGAAGAGTCGACTCCTTTTGAATATTATAATCAGAGAGTGTTCGGCCGTCTTCTAGTTGT 24281 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| |||| ||||| || |||||||| |||||||||||||| ||||| Sbjct 24280 TTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCTTTGTCTTGGATTTTG 24221 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||||||||||||||| |||||||| | |||| |||||||| ||| Sbjct 24220 GCCTTTACGTTCTCAATGGTGTCCGACGGCTCCACTTCCAAAGTAATTGTCTTTCCGGTC 24161 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 24160 AGAGTCTTGACGAATATCTGCATT 24137 >seq669 Length=42814 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||||||||| || |||||||| | ||||| | || || || | ||| Sbjct 31867 TGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCTAACTGT 31926 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||||| ||||| || |||||||||||||| ||||| ||||| ||| Sbjct 31927 TTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTT 31986 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| || ||||| || || |||||||| | |||| |||||||| || Sbjct 31987 GCCTTAACGTTTTCGATGGTATCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTG 32046 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | ||||||| Sbjct 32047 AGGGTTTTCACGAATATTTGCATT 32070 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || ||||| |||||||| | ||||| | || ||||| | ||| Sbjct 32321 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCGTCTTCTAACTGT 32380 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || || || || |||||||||||||||||||| ||||| ||| Sbjct 32381 TTGCCCGCAAATATCAATCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGAATCTTT 32440 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || ||||| || || || ||||| || | |||||||| || Sbjct 32441 GCCTTTACATTTTCGATAGTGTCAGAGGGCTCGACCTCAAGAGTGATAGTCTTTCCGGTG 32500 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | |||||||| Sbjct 32501 AGGGTTTTCACAAATATTTGCATTT 32525 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || |||| ||||| || |||||||||||||| ||||| ||||| ||| ||| ||||| Sbjct 32165 ATCAGTCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTT 32224 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || |||||||| || |||||||| | |||| |||||||| || | ||||| ||| Sbjct 32225 TCGATGGTGTCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACG 32284 Query 195130 AACACTTGCATT 195141 || | |||||| Sbjct 32285 AATATCTGCATT 32296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108680642696615