Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11840 163 3e-35 seq3673 114 1e-20 seq4930 104 3e-17 >seq11840 Length=1854 Score = 163 bits (180), Expect = 3e-35 Identities = 323/481 (67%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||| ||||| || || |||| |||| |||||||||||| || || || ||||| || Sbjct 729 TGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATCGAC 788 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT-GGATGCAAC-TAATAAGC 47445 ||||| || || || || || || || || || || ||||| ||| |||| ||| | | Sbjct 789 TCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA--C 846 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 |||| | |||||||||||| |||| ||||| ||| || || | Sbjct 847 TATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAG 906 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| | ||| | ||| ||||||||||| |||||| | ||| ||||| | || Sbjct 907 TTGGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCAT 966 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||| | |||||| || | |||||| | ||||||||| || ||||| || | |||| Sbjct 967 ATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAAT 1026 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTT--GCTTCTGATGATTCAAAAGGATA 47683 |||| || ||||| || | || || || || || ||||||| |||||| || | Sbjct 1027 ATATGGTCTCAAAAATCTGGATATTAAG--TCGTTTCGCTTCTGGACTTTCAAAGGGCTG 1084 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || || ||||| || ||||| |||||||| || |||| || | Sbjct 1085 ACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCT 1144 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||||||| ||| | ||| || | ||||| | ||| | || || |||||||| || Sbjct 1145 CTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAG 1204 Query 47804 A 47804 | Sbjct 1205 A 1205 >seq3673 Length=14246 Score = 114 bits (126), Expect = 1e-20 Identities = 178/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||| || || || |||||| ||| ||||||||||| || || ||| |||| Sbjct 13812 ACCAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATA 13753 Query 19405 AAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 || |||||||| ||| || |||| |||||| || || | ||| | | ||||| Sbjct 13752 AAGTGTTTTTC-TCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTAC 13694 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 ||||| |||||||| ||||| ||||| ||| | |||||||| | ||| || || || Sbjct 13693 CTCTTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTA 13634 Query 19524 TTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCATTTTTTG 19583 | || ||||| | ||||| | ||||||||||||| ||||| || |||| Sbjct 13633 CTCAATTGGAAACACCACAAAACGGGACGGGTTTTCTTTAAGAAGTGGTTC--TTCTTTG 13576 Query 19584 AAAAATAATAA 19594 | ||| ||| Sbjct 13575 GGAGATATTAA 13565 >seq4930 Length=2674 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 48624 GATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 || || ||| | ||||| ||| || | || ||||||||||| || ||| || || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 48684 TCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATT 48743 ||| || ||||| | || || | ||| | ||||| |||||||| ||| |||||| Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA- 48802 ||| || |||||||| | ||| | | || ||||| ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 48803 TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 |||||| || | |||| ||| || | || |||| || |||| |||||| Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561712899745800