Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq54669 354 1e-92 seq6749 109 1e-18 seq4872 86.0 1e-11 >seq54669 Length=12211 Score = 354 bits (392), Expect = 1e-92 Identities = 729/1079 (68%), Gaps = 4/1079 (0%) Strand=Plus/Plus Query 207863 GTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTT 207922 ||| || || || |||| ||||||| ||| |||||||| ||||| ||||| |||||||| Sbjct 9365 GTCAATTTGTCCCACCAAGTAAGAACTAACCTCTACTTCTTGAGGCGCAACTTGAACGTT 9424 Query 207923 GTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAG 207982 || | ||| ||||| | || ||||| ||||| |||||| | | | | || || Sbjct 9425 ATCGGATACTAGCCAGGCATTTATCCAGGGAATCGGGTTAAAACGGATGCTAAAAGGTGC 9484 Query 207983 ATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGAT 208042 | || || | || ||||||||||| ||||||||||| |||| ||||| || || || Sbjct 9485 TGCTAACCCCACAGCTTGCATACGGATATTGGTAATGTATTCAATGTACTGACAAAGAAT 9544 Query 208043 CTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTC 208102 ||||| ||||| || ||||| |||||||| || | ||| || ||||| ||||| || Sbjct 9545 GTCTTTATTCAGTCCAATCATAGAACCATCGCGAAATAAATATTCCGCCCAATCTTTCTC 9604 Query 208103 TTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTC 208162 || || || | | ||||| | ||||| | | ||| | || | ||||| || Sbjct 9605 CTGTTGTGCTGCCGAGACGAATAAATCGTAACATTGTTGTTGGCAATGATGAGCAATTTC 9664 Query 208163 AGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAAC 208222 |||| ||| |||||| || || || ||||| | | || ||||| || || | Sbjct 9665 TACCATTTCTAAATCATCATTGCCGGAACGCATCAAATATAAAATATGCTGTGTTCCGGC 9724 Query 208223 CATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAG 208282 | || || ||||| ||||| ||||||| ||||| || ||||| ||||||||||| | Sbjct 9725 AAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTTAGCATTACCTTCCATTAA 9784 Query 208283 CTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAG 208342 | |||||| ||||| || || || || || || || || || |||| |||||| | Sbjct 9785 TTCACGTTCAGCAAAAGCAAACGAACAGGCAAAACTCACATAAAAGCGAACAGCTTCTAA 9844 Query 208343 TGAGTTGATAGATTGCAGAGCCAGGTACAG-TGCTTTCTTAATAGCACGAAGATTAACAT 208401 || |||| | |||| | ||||| |||||| ||||| | | | | | | || Sbjct 9845 TGCATTGACACTCATCAGACATAAATACAGCTGCTTTTTTAAT-GTAGGTAAACTGACGG 9903 Query 208402 TAA-CCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTACTGGTTGATC 208460 ||| | |||| ||||| | || ||| |||| || | ||| || | || || Sbjct 9904 TAATCGTTCT-ACCATTTATTAGATGGCAACCCTCTCCTAATAAATGATAATAATTAGTC 9962 Query 208461 AAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCG 208520 | ||||||| || |||||| |||| | || ||||| ||| | || Sbjct 9963 ATCTCAATCAGAAGATCATAGTAAGCAGAAATATCCTTTGCCCGTTTTAAGATTTCTTGA 10022 Query 208521 TTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGA 208580 ||| |||| || ||||| || | ||||||||||| || || || | || || || Sbjct 10023 TTAGTGACAATATCCTCAAATACCACCGAAGGATCGTTGACAATATTACGAATAATATGC 10082 Query 208581 GTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGC 208640 ||||| |||| || | ||| ||| | || ||||||||| |||| |||||||| Sbjct 10083 GTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTCCACCCAAGTTTCCAGT 10142 Query 208641 TCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCC 208700 || || ||||| | || | ||| |||| ||| || | || |||||||| || || Sbjct 10143 TCAGGAATAGAAATTAATGGTAATAAAGCAATGTTAGGGCTGCGTCCCTGGATTGAATCT 10202 Query 208701 AGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCC 208760 | || || |||||||| | ||||| || || | | ||| || || || |||||||| Sbjct 10203 AACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTTTTCATGCTCAGGTAAAGCA 10262 Query 208761 ATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGT 208820 ||||| || | ||||| | ||||| | ||||| || ||||| || || ||||| Sbjct 10263 GCATAGTCGATTCTATCACGTGCAACATCAATCTCTTCCGGCCGCCAAAAAAAGGAAAGC 10322 Query 208821 TGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTG 208880 ||||| ||||| | ||| ||||| || || || || || || | || || ||||| Sbjct 10323 TGTTTTTCAATCAATTTTTCAAACATGATATGTTTTTGCTGATCAAAGCGTGAGACGTTT 10382 Query 208881 ACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAAGT 208939 || ||||| | ||||| |||| |||||| | ||||| || ||| ||||| Sbjct 10383 ACTGGCTGACCAAAAAACATCGGTTCAATTAATTGGTTATTTTTTTTATGGGAAAAAGT 10441 >seq6749 Length=158988 Score = 109 bits (120), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 16118 GAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTA 16177 || |||||||||||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 9031 GATTGGCGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 8972 Query 16178 TCCACTGAGCTAAGAGCGCC 16197 ||| |||||||||||||||| Sbjct 8971 TCCGCTGAGCTAAGAGCGCC 8952 >seq4872 Length=25388 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16840 GGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACA 16896 || |||||||| | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1072 GGACTCGAACCAGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTACA 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910452704825400