Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq669 183 2e-41 seq17432 147 2e-30 seq214 131 1e-25 seq38498 125 6e-24 >seq669 Length=42814 Score = 183 bits (202), Expect = 2e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| ||||| | ||||||||||||||| || || || || || |||||||| | Sbjct 32295 TTCCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 32354 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | | || || || || || || ||||||||||| | ||| ||||| || | Sbjct 32355 AGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAG 32414 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||||||||| || ||||| ||| |||||| |||| | ||||||||| | || | Sbjct 32415 GAATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCGA 32474 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| || || ||||| | ||||| |||||||| ||||| Sbjct 32475 CCTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCAT 32523 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| ||||| | |||||||||||||| || |||||||| || |||||||| | Sbjct 31841 TTCCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAG 31900 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | | | || || || || || || ||||| || | | ||||||||| || | Sbjct 31901 AGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAG 31960 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || ||||| ||| || || |||| | || || || | |||| Sbjct 31961 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTATCGGAGGCCTCCA 32020 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | || || ||||| | ||||| || ||||| ||||| Sbjct 32021 CTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||||||||| ||||| | ||| ||||| || || || || || || || |||||||| Sbjct 31611 ATTTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATC 31670 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | || ||| | | | || || || || || || ||||| || | | ||||||||| || Sbjct 31671 AGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGG 31730 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| ||||| || || ||||| ||| || || |||| | || || || | || Sbjct 31731 AGGAATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTC 31790 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| | || || ||||| | || || || ||||||||||| Sbjct 31791 CACTTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCAT 31841 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 |||| | |||||||||||| ||||||||||| || || ||||| ||| || || || Sbjct 32165 ATCAGTCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTT 32224 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || | |||||||| | ||| | || || ||||| | ||||| || Sbjct 32225 TCGATGGTGTCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACG 32284 Query 101459 AATATCTGCAT 101469 ||||||||||| Sbjct 32285 AATATCTGCAT 32295 >seq17432 Length=31749 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | || |||||||| || || || ||||| ||||| ||||| | Sbjct 24366 TTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAG 24307 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||| | | || || | ||| || || ||||| |||| | ||||||||| || | Sbjct 24306 AGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAG 24247 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| ||||| ||||| ||||| | || | ||||| |||| |||| Sbjct 24246 GAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCA 24187 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | || || ||||| | ||| || || ||||||||||| Sbjct 24186 CTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||| | || | || ||||||||||| || || ||||| |||||||| |||| Sbjct 25049 TCCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGA 24990 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||| | | || |||| ||| || || || || ||||| || || ||||| || || Sbjct 24989 AAGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGG 24930 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| |||||||| |||||||| || |||||| | || | ||||| |||| ||||| Sbjct 24929 AATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCAC 24870 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| | ||||| || || ||||| || || || || ||||| ||||| Sbjct 24869 TTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | || ||||||||||| || || ||||| || |||||||||| Sbjct 23974 TTCCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGG 23915 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | | | || || | ||| || || ||||| |||| | |||||| ||||| | Sbjct 23914 AGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAG 23855 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| ||||| || ||||| || || || | || | ||||| || | |||| Sbjct 23854 GGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCA 23795 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | ||||| ||||| || ||||| || || || ||||| Sbjct 23794 CCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCAT 23746 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| ||||| | || ||||||||||| || || ||||| || || ||||||| Sbjct 24594 TTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGG 24535 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | || ||||| || || || || || |||| | ||||| ||||| | Sbjct 24534 AAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAG 24475 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||||||||| ||||| || || | || | ||||| || | |||| Sbjct 24474 GGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCA 24415 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | ||||| ||||| | ||| || ||||| || ||||| Sbjct 24414 CCTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | || |||||||| || || || ||||| ||||| || || | Sbjct 24822 TTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAG 24763 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||| | | || || | ||| || || || || || | |||||||||||| || | Sbjct 24762 AGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAG 24703 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || ||||| || |||||||| || || | || | ||||| |||| |||| Sbjct 24702 GAATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCA 24643 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || || ||||| || ||||| || ||||| ||||| Sbjct 24642 CTTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 >seq214 Length=17119 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || ||||||||||| || || ||||| || ||||||||| Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCTA 1015 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||||| | || || ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 1016 AGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGGT 1075 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || ||||| ||| |||||| | || | ||| || | ||||| Sbjct 1076 ATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTCCACC 1135 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || || || || || || || ||||| Sbjct 1136 TCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCAT 1182 >seq38498 Length=6817 Score = 125 bits (138), Expect = 6e-24 Identities = 242/353 (69%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 13621 TTATTT---ATTTTTATTAATGTAACAATCTATATTGAATTTTCGTTTACAACCTTCAAA 13677 |||||| || |||||||||||| || | || || || || | ||| || | | Sbjct 5243 TTATTTGTGATATTTATTAATGTATTGATTGACATCAAACTTGCGCTCACATCCCTTGTA 5302 Query 13678 ATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCCATCCAGGCACGATCGTGAGTTCC 13737 ||||||| || ||||| || | | || | || ||| | |||||||| | || Sbjct 5303 GTTCATGTAACGAATTTTGCCGAACACCGGCCTTTCAGCCCATCCCTGATCGTGAATACC 5362 Query 13738 GCATATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTT 13797 ||||| |||||||| || ||| |||| |||||||| |||||||| ||||| ||| || Sbjct 5363 ACATATAGACCACATACAGCCGACATACCCGTTGGGGTCGCGTCCGTCCAATTCGTACTT 5422 Query 13798 GTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA--GGCGAAATAGACCATTCTAAT 13855 ||||| ||| || ||| ||| ||| |||| || | | ||| || | | Sbjct 5423 ATCGTTCAAAAGAATAGCGA--ATTCGAGCGCCTGTTCTGGTGTTTGTGTCCACTCGAGT 5480 Query 13856 AtttttttAGCCCAATATATTCTCATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGT 13915 || || || |||||||| |||| |||| | || ||||||||||| | || | | ||| Sbjct 5481 ATCTTCTTTGCCCAATACATTCGCATAAAGCCATGCATTTTGCCATCTCTTGTCATTTGT 5540 Query 13916 GTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCGGAATTTTCTAA-TTCTC 13967 ||||||| | ||||||||| ||| ||||| || | | ||||| ||||| Sbjct 5541 CTCTGAGCGGAGTTCCACAACTGGTCGTGAGTCTCAGCCCTCTCTAACTTCTC 5593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396006273765165