Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq54669 159 8e-34 seq33040 111 4e-19 seq17181 102 2e-16 seq13760 87.8 4e-12 >seq54669 Length=12211 Score = 159 bits (176), Expect = 8e-34 Identities = 250/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 224535 TGGTCGTGTCCGTGCAGTTGGTTCAGAAATTCGTGGTGGTGATGCTGTTCATACTGGATT 224594 |||||| ||||||| ||| | ||||||| |||||| ||| ||||||| || | Sbjct 12077 TGGTCGCATCCGTGCGCAAGGTAGTGGAATTCGTCATGGTGAAGCTTTTCATACCGGTTG 12018 Query 224595 GATTCCATTCCTACACGCAGTTGCTAAAACTG---TTAAATCTTGTTCTCAAGGTGGTGT 224651 ||||| || || | || || | | |||| | ||||||||||||||||| ||||| Sbjct 12017 TATTCCGTTT-TATAAACACTTTC--AGACTGCGGTAAAATCTTGTTCTCAAGGAGGTGT 11961 Query 224652 GCGTGGTGGTGCAGCAACAGTCCACTTCCCATTGTGGCATTACGAGTTTGAAGATCTTGT 224711 |||||||||||||||||| | || || ||||||||| ||| | ||| |||| | Sbjct 11960 GCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAGAGATAGAAAATCTGTT 11901 Query 224712 AGTACTAAAGAATAACAAAGGTACAGAAGTATCTCGTGTTCGTCAGTTGGATTATTGTTT 224771 ||| |||| |||||| ||| |||| ||||||||| || ||||||| | | Sbjct 11900 GGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCCATATGGATTACGGGGT 11841 Query 224772 CCAAATTAATAAAACTTTCTATCAACGCTTGATTGAACGTAAAGATATTACTTTCTTCTC 224831 |||||||||||| | | ||||| || || | || |||| || ||| | || Sbjct 11840 ACAAATTAATAAATTTATGTATCAGCGTTTAGTAAAAAACGAAGAGATAACTCTATTTAG 11781 Query 224832 TCCAAGTGATGTTCCTGGTTTGTATGATGCATTCTGTGCAGACCAAGAAAAATTT 224886 |||| ||| ||||| ||||| ||||| || |||| ||| || ||| | ||||| Sbjct 11780 TCCATCTGACGTTCCGGGTTTATATGAAGCTTTCTTTGCTGATCAAAATGAATTT 11726 >seq33040 Length=267 Score = 111 bits (122), Expect = 4e-19 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 324500 TTTTAAGAAGTATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAG 324559 ||||| ||| | ||||||||||||||||| |||||||||| |||||||||||| || || Sbjct 85 TTTTACGAAATCGATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG 144 Query 324560 GTCAACGGTTCGAACCCGTTTAGCTCCAC 324588 |||| |||||||| |||| |||||||||| Sbjct 145 GTCAGCGGTTCGATCCCGCTTAGCTCCAC 173 >seq17181 Length=34525 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| |||||||||||| || |||||| |||||||| | Sbjct 20940 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 20881 Query 324575 CCGTTTAGCTCCAC 324588 ||| |||||||||| Sbjct 20880 CCGCTTAGCTCCAC 20867 >seq13760 Length=57140 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/200 (72%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 150464 GGTGATGTTCCAGATTCTATGAAAGA-TGTTGAAATTCTTTCTTTGAATATGGGTGCATT 150522 ||||||||||| || |||||||| ||||| | || | | ||| |||| ||| |||| Sbjct 52103 GGTGATGTTCCGGAAGTGATGAAAGAATGTTGCATTTATG-CATTGGATATTGGTTCATT 52045 Query 150523 TACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG-TGTAGACAATTTGCTACAAG 150581 |||||||| || || || ||||| || ||| |||| | || | ||| | || || Sbjct 52044 GTTGGCTGGTACCAAATACCGCGGTGATTTTGAAAAACGCTTTAAAGTATT-GTTAAAAC 51986 Query 150582 AACTAAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTG 150641 || || ||||| | || ||||| || || |||||||| ||||||||||| || | Sbjct 51985 AATTAGAAGAAGATAAAAATAGCATTCTATTTATTGATGAAATTCATACTATTATTGGCG 51926 Query 150642 CTGG---TGCGACTGGCGGC 150658 |||| ||| |||||||| Sbjct 51925 CTGGATCTGCTTCTGGCGGC 51906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146761931179810