Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq11509 109 8e-19 seq54669 96.9 5e-15 seq15696 89.7 8e-13 >seq11509 Length=51200 Score = 109 bits (120), Expect = 8e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 198929 TCATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGG 198988 ||| | ||||||||||||||||||||||||||| ||||||||||||| | |||| |||| Sbjct 31921 TCACTAGGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGG 31980 Query 198989 TTCGAGTCCAGTAGGGGCCACCA 199011 ||||| ||||| ||||||||||| Sbjct 31981 TTCGAATCCAGCAGGGGCCACCA 32003 >seq54669 Length=12211 Score = 96.9 bits (106), Expect = 5e-15 Identities = 251/383 (66%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 119883 TTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTGTTA 119942 ||||| || || || | |||||| | | || | || | || ||| ||| |||| Sbjct 11829 TTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTA 11888 Query 119943 TTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTAGCA 120002 || || ||||| | ||| || || | ||| |||||||||| || || | || || Sbjct 11889 TTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCT 11948 Query 120003 GAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTGTAG 120062 | || ||||| | | | ||||| ||||| || |||||||| || ||||| || || Sbjct 11949 GCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAA 12008 Query 120063 AATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCACGA 120122 || || || |||||||| ||||| || | |||||| ||| | |||||| Sbjct 12009 AACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGG 12068 Query 120123 ATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATATAACTAATAATAGATGCA 120182 || |||||||||||||||||| || || || || | ||| | || || | Sbjct 12069 ATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCTT 12128 Query 120183 GACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACTAAAT 120242 | || | || ||||| | || | || || |||| || ||||| || |||||| Sbjct 12129 GCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAAT 12188 Query 120243 TGGCGCGTTGGGGTGCGGGCACC 120265 ||||| || || || || |||| Sbjct 12189 TGGCGGGTAGGCGTACGTACACC 12211 >seq15696 Length=125859 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 89857 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 89798 Query 199840 GTCCTGTATCACCGACCACTT 199860 |||| | || |||||||||| Sbjct 89797 ATCCTCTCTCGCCGACCACTT 89777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740927387778600