Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq54669 168 7e-37 >seq54669 Length=12211 Score = 168 bits (186), Expect = 7e-37 Identities = 300/436 (69%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 40478 GGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCT 40537 ||||||||||| ||||| ||||| || | ||||||| | || |||| || || | Sbjct 12211 GGTGTACGTACGCCTACCCGCCAATTTAGCTCTTGTGTATTGATAGAATGTGGGGACAGT 12152 Query 40538 CTTGGTTCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGT 40597 | | |||| | || || | | || ||| | || ||| |||| || || || || Sbjct 12151 TTGGATTCTATCAATGCCACAGCAAGCGCAATCATAAAATATGTTTCGCAGCGCGCGGGG 12092 Query 40598 ATTGGGGTTAACGCGGGACATATTCG--CGCAATGGGTTCTAAAATCCGTGGTGGTGAAG 40655 ||||| |||| || || | || || ||||| ||| | ||| ||| |||||||| Sbjct 12091 ATTGGTATTAATGCTGGTCGCATCCGTGCGCAA--GGTAGTGGAATTCGTCATGGTGAAG 12034 Query 40656 CTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTT 40715 || ||||||| ||| ||||| || | ||||| |||| || || || ||||| |||| Sbjct 12033 CTTTTCATACCGGTTGTATTCCGTTTTATAAACACTTTCAGACTGCGGTAAAATCTTGTT 11974 Query 40716 CACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAG 40775 | || || || || ||||||||||| ||||| | | || ||| | |||||| | || Sbjct 11973 CTCAAGGAGGTGTGCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAGAGA 11914 Query 40776 TTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATC 40835 | ||||| || |||| || || || ||| || || ||||| || || ||||| ||| Sbjct 11913 TAGAAAATCTGTTGGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCCATA 11854 Query 40836 TTGATTATGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTAATGAATCGTGATTACA 40895 | ||||| || ||||| |||| | || |||||| | || ||| | || || | | Sbjct 11853 TGGATTACGGGGTACAAATTAATAAATTTATGTATCAGCGTTTAGTAAAAAACGAAGAGA 11794 Query 40896 TTACGCTGTTTAGTCC 40911 | || || |||||||| Sbjct 11793 TAACTCTATTTAGTCC 11778 Score = 111 bits (122), Expect = 2e-19 Identities = 257/381 (67%), Gaps = 10/381 (3%) Strand=Plus/Minus Query 42162 ATAACCACTTAGAACAACCTATGTTTTTTGGTGA---AGATACTGGTGTTGCACGTTATG 42218 ||||||| ||| |||| |||||||||||| | || || || | |||| | || Sbjct 10422 ATAACCAATTAATTGAACCGATGTTTTTTGGTCAGCCAG-TAAACGTCT--CACGCTTTG 10366 Query 42219 AATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGC 42278 | ||| ||||| | | || |||| ||| ||||||||||||| || || |||| Sbjct 10365 ATCAGCAAAAACATATCATGTTTGAAAAATTGATTGAAAAACAGCTTTCCTTTTTTTGGC 10306 Query 42279 GTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATG 42338 | |||||||| | ||| | | ||| | || | ||||| | ||||| |||| Sbjct 10305 GGCCGGAAGAGATTGATGTTGCACGTGATAGAATCGACTATGCTGCTTTACCTGAGCATG 10246 Query 42339 AAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGAC 42398 |||||| ||||| | ||| || | |||||||||||||||||| | || ||||||| Sbjct 10245 AAAAAAATATTTTTATTAGTAATTTAAAATATCAAACCCTGTTAGATTCAATCCAGGGAC 10186 Query 42399 GTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGAT--GTGAGCATGGAAACCTGGAT 42456 | | |||||| | || || || || ||| | | || ||| | ||||||| ||| | Sbjct 10185 GCAGCCCTAACATTGCTTTATTACC-ATTAATTTCTATTCCTGAAC-TGGAAACTTGGGT 10128 Query 42457 CGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 42516 || || ||| | ||| ||| ||| | || ||| ||| ||||||||| ||||| Sbjct 10127 GGAGACCTGGTCATTTTTTGAGACCTTACATTCTCGTTCTTATACGCATATTATTCGTAA 10068 Query 42517 CTTGCACATTGATCCTTCTGT 42537 | || |||||||| || Sbjct 10067 TATTGTCAACGATCCTTCGGT 10047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557600598132600