Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq54669 188 7e-43 >seq54669 Length=12211 Score = 188 bits (208), Expect = 7e-43 Identities = 272/384 (71%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 ||| || | ||| ||||| | |||||||| | ||| |||| || || || || ||||| Sbjct 11822 CATAAATTTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACC 11881 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 ||| || |||||||||||||| ||||| | ||| | |||||||| ||| || | | Sbjct 11882 ACGGTTATTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAA 11941 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct 11942 CGTTGCTGCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTG 12001 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | || ||||| || ||||| |||| |||| || |||| |||| Sbjct 12002 TTTATAAAACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTG 12061 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 134082 || || || ||| || || || || || || || |||| | ||| || || || Sbjct 12062 CGCACGGATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGAT 12121 Query 134083 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 134142 | | || ||||| ||||||| || || ||| ||| || | ||||||||| Sbjct 12122 TGCGCTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGA 12181 Query 134143 ACTAAACTGACGAGTAGGAGTACG 134166 ||||| || || ||||| ||||| Sbjct 12182 GCTAAATTGGCGGGTAGGCGTACG 12205 Score = 102 bits (112), Expect = 8e-17 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 131431 TTACGCATAATGTGCGTGTAAGAACGAGAGTGAATCGTTTCAGAGAAAGTCCAAGTCTGG 131490 ||||| ||||| ||||| ||||||||||| || | || ||| | || | ||| |||| Sbjct 10068 TTACGAATAATATGCGTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTCC 10127 Query 131491 TTCCAAGTATCTAATGACGGGTCAGAAATCAAAGC--AGAAAGAACTGCAGCAGGAGCCC 131548 |||||| || | | || |||||| || | | |||| | || ||| | Sbjct 10128 ACCCAAGTTTCCAGTTCAGGAATAGAAATTAATGGTAATAAAGCAATGTT--AGGGCTGC 10185 Query 131549 GTCCTTGAATACTGTCTAAAAGAGACTGATATTTCAAGTTGTTAATAAAAATAttttttt 131608 |||| || || ||||| || | |||||||| || || |||||||||||||||||| Sbjct 10186 GTCCCTGGATTGAATCTAACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTTTT 10245 Query 131609 GATGCTCTGGGAGTTTATCAAATTGAGCTCTGTCA-GT-CATCAAGTTAACTTCTTCTGG 131666 |||||| || | | || | | ||| ||| || || || | || ||||| || Sbjct 10246 CATGCTCAGGTAAAGCAGCATAGTCGATTCTATCACGTGCAACA--TCAATCTCTTCCGG 10303 Query 131667 GCGCCAGAAAAATGAGAGCTGCTTTTCAATCAGTTCTTCAAA 131708 ||||| ||||| || ||||| |||||||||| || |||||| Sbjct 10304 CCGCCAAAAAAAGGAAAGCTGTTTTTCAATCAATTTTTCAAA 10345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512218184062200