Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17432 141 2e-28 seq669 102 2e-16 seq214 86.0 1e-11 >seq17432 Length=31749 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| ||||| | ||| ||||| | ||| | ||| ||| || ||||||||||| Sbjct 24367 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGA-ATATTATAATC 24309 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||||| | || || | |||||| || |||||||| | |||||||||||| || Sbjct 24308 AGAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGG 24249 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| ||||| ||||| ||||| || || | || |||| || Sbjct 24248 AGGAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTC 24189 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||| || || || || | || || | |||||||||||| Sbjct 24188 CACTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCATT 24137 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| | ||| | ||| ||||| | || | ||| ||| || || |||||||| Sbjct 24595 ATTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGA-ATGTTATAATC 24537 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || | || ||||| ||||| || || ||||| | ||| ||||| || || Sbjct 24536 GGAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGG 24477 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||||||||| ||||| || || || || | || || | || Sbjct 24476 AGGGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTC 24417 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || |||||||| || || | || |||| ||| || |||||| Sbjct 24416 CACCTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 24365 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| ||||| | ||| ||||| | || | ||| ||| || || || ||||| Sbjct 23975 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGA-ATGTTGTAATC 23917 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || | || || | |||||| || |||||||| | ||||||||| || || Sbjct 23916 GGAGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGG 23857 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || ||||| || || || || || || || || | || || | || Sbjct 23856 AGGGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTC 23797 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||||||||| || || || ||||| | || || |||||||| Sbjct 23796 CACCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 >seq669 Length=42814 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| | |||||||| | || | |||||| ||| || |||||| Sbjct 31840 ATTCCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 31899 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || || ||||| || |||||||| | |||||||||||| || Sbjct 31900 GAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGA 31959 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || || || || | ||| || | || Sbjct 31960 GGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACGTTTTCGATGGTATCGGAGGCCTCC 32019 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||| || || || || | ||||| | ||||| |||||| Sbjct 32020 ACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCATT 32070 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||| | || ||||| | ||| | ||| || || || |||||||| Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || || || ||||| || |||||||| | |||||||||||| || || Sbjct 31675 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31734 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || || || || || | ||| || | || ||| Sbjct 31735 ATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCACT 31794 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||||||||| || || || | || || | |||||||||||| Sbjct 31795 TCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 31842 >seq214 Length=17119 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | | || ||||| | || | ||| || ||| || ||||| | | Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATC-GCT 1014 Query 192370 AAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | || || |||||||| ||||||||||| || | ||| ||||| || || Sbjct 1015 AAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGG 1074 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||| || || || || || || || |||||||| |||| ||| | || || Sbjct 1075 TATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTCCAC 1134 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| ||||| || || || || | || || |||||||| Sbjct 1135 CTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTT 1185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983769283890750