Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq17432 129 1e-24 seq669 96.9 6e-15 >seq17432 Length=31749 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | ||| ||||| | ||| | ||| || |||||||||||| Sbjct 24367 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCA 24308 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | |||||| || ||||| || | ||||||||| || || Sbjct 24307 GAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGA 24248 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||| || || || || |||| || Sbjct 24247 GGAATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCC 24188 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||| || || || || | || || | ||||||||||||| Sbjct 24187 ACTTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCATT 24137 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | ||| ||||| | || | ||| || ||| || ||||| Sbjct 23975 ATTCCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCG 23916 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || | |||||| || ||||| || | |||||||||||| || Sbjct 23915 GAGAGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGA 23856 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || || || || || || || | || Sbjct 23855 GGGATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCC 23796 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||||||||| || || || ||||| | ||| || |||||||| Sbjct 23795 ACCTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||| ||||| | || | ||| || ||| |||||||| Sbjct 24595 ATTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCG 24536 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| ||||| ||||| || || || || | ||| |||||||| || Sbjct 24535 GAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGA 24476 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| || || || || || || || | || Sbjct 24475 GGGATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCC 24416 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| || || | || |||| || || |||||| Sbjct 24415 ACCTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 24365 >seq669 Length=42814 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || | || ||||| | ||| | ||| || ||| || ||||| || Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || |||| || || ||||| || ||||| || | ||||||||| || || || Sbjct 31675 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31734 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || || || || || || ||||| || | || ||| Sbjct 31735 ATACCTTCCTTGTCCTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCACT 31794 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||||||| || || || | || || | ||||||||||||| Sbjct 31795 TCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 31842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904498501401000