Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq54669 100 3e-16 seq11509 87.8 2e-12 seq4872 86.0 7e-12 >seq54669 Length=12211 Score = 100 bits (110), Expect = 3e-16 Identities = 258/385 (67%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 9418 GGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTATTAATCAAAACTGGTGATACA 9477 || || || || || ||||| || || |||||||||||||| || || ||| || | Sbjct 12211 GGTGTACGTACGCCTACCCGCCAATTTAGCTCTTGTGTATTGATAGAATGTGGGGACAGT 12152 Query 9478 TTGGACTCAATTAATGCCACTGCGAAAAGC-ATCGTGGATTATGTTTCCAAACGTGCTGG 9536 ||||| || || |||||||| || || || ||| | | |||||||| | || || || Sbjct 12151 TTGGATTCTATCAATGCCACAGC-AAGCGCAATCATAAAATATGTTTCGCAGCGCGCGGG 12093 Query 9537 CATCGGATTCGATGTTGGGGCAATTCGTG-GCATCGGTAGCCCTATCCGTAAAGGGGAAA 9595 || || | ||| ||| || |||| ||| ||||| || ||| | || ||| Sbjct 12092 GATTGGTATTAATGCTGGTCGCATCCGTGCGCA-AGGTAGTGGAATTCGTCATGGTGAAG 12034 Query 9596 TGGTCCATACAGGTCTGGTTCC-ATTCATCAAGTATTT--GACTGGTGCCCTGAAGTCTT 9652 | ||||| ||| |||| || || || ||| ||| ||| | || |||| Sbjct 12033 CTTTTCATACCGGTTGTATTCCGTTTTATAAACACTTTCAGAC---TGCGGTAAAATCTT 11977 Query 9653 GCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTATGTTCCCATCTGGCATTATC 9712 | |||||||| ||| | |||||||| | ||||| | | | ||||| | ||||||| Sbjct 11976 GTTCTCAAGGAGGTGTGCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAG 11917 Query 9713 AATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGATTGGAAGAGAACCGTGAACGCC 9772 | | || || | | || | ||||| |||||||| | ||||| || |||| |||| Sbjct 11916 AGATAGAAAATCTGTTGGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCC 11857 Query 9773 GTATCGACTATGGGATTCAGATTAA 9797 ||| || || ||| | || ||||| Sbjct 11856 ATATGGATTACGGGGTACAAATTAA 11832 >seq11509 Length=51200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 83204 TAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTA 83263 || ||||| ||| |||||| | |||||||||||| | ||||||||||||| ||||||| Sbjct 32006 TATTGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCTCTA 31947 Query 83264 ACC-ACTGAGCTACGGGGCC 83282 ||| ||||||||| |||||| Sbjct 31946 ACCAACTGAGCTAAGGGGCC 31927 >seq4872 Length=25388 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 82728 TGGCAGGACTTGAACCTGCGACATACGGTTTAACAGACCGCCGTTCTACCGACTGAACTA 82787 |||| ||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||| Sbjct 1077 TGGCTGGACTCGAACCAGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTA 1018 Query 82788 CA 82789 || Sbjct 1017 CA 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520816923594000