Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq38498 150 3e-31 seq12664 87.8 3e-12 >seq38498 Length=6817 Score = 150 bits (166), Expect = 3e-31 Identities = 311/455 (68%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 182857 GTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCAG 182916 || || |||||| || ||||||||| ||||| |||||| || |||| |||| | || || Sbjct 5725 GTTAGGAGAGAATTAGCGGATAATTACTGTTATTATAATGAAAATTATGATAATCTTAAG 5666 Query 182917 TCTACTCACGCATGGGCTAGAAGAACATTAGAAGA-TCACGTTAATGATCCTAGAAAGTA 182975 || ||| ||||| | | ||| | ||| | |||| || || | | || Sbjct 5665 GGCGCTTACGATTGGGCGCGGAATACACT-GAACACTCACCGGAAAGACAAACGCGAATA 5607 Query 182976 TATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATC 183035 | |||||||| || | | | || | ||| || || || |||| | ||||| | | Sbjct 5606 TCTCTATTCTTTTGAGAAGTTAGAGAGGGCTGAGACTCACGACCAGTTGTGGAACTCCGC 5547 Query 183036 ACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAA 183095 || | ||| |||| ||||| || ||||||||| | ||| | |||||||| ||||| || Sbjct 5546 TCAGAGACAAATGACAAGAGATGGCAAAATGCATGGCTTTATGCGAATGTATTGGGCAAA 5487 Query 183096 AAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTT-GAGTTATAGTATCTATATGA 183154 |||||||| || |||||| ||| || ||| | || | || || ||| | ||| Sbjct 5486 GAAGATACTCGAGTGGACACAAACACCAGAACAGGCGCTCGAATTCGCTATTCTTT-TGA 5428 Query 183155 ACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCT 183213 || ||||||||||| | ||||| ||| || || ||||| || || || |||||||||||| Sbjct 5427 ACGATAAGTACGAATTGGACGG-ACGCGACCCCAACGGGTATGTCGGCTGTATGTGGTCT 5369 Query 183214 ATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATAT 183273 || || || | |||||| | ||| ||||| || | || || || || | || Sbjct 5368 ATATGTGGTATTCACGATCAGGGATGGGCTGAAAGGCCGGTGTTCGGCAAAATTCGTTAC 5309 Query 183274 ATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 ||||| || || | | | || || |||||||| Sbjct 5308 ATGAACTACAAGGGATGTGAGCGCAAGTTTGATGT 5274 >seq12664 Length=32204 Score = 87.8 bits (96), Expect = 3e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 || || || |||||| || |||| | ||| || || ||||||||| ||||||||||||| Sbjct 19023 GGAATGTGTGATAATCTATTAACTTGTATTGTGAGGGCCTGGGATCTAAATAAACCTCTC 18964 Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213 | | ||||| || |||||| || |||||| ||||| || || || || || Sbjct 18963 TTATACTGTCCGGCAATGAATGTCCACATGTGGTCGCATCCAATAACTGACCGCAATTTA 18904 Query 143214 GATGC-TTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCTG 143272 || || || || ||| | |||| || |||| | | || |||| || ||||| Sbjct 18903 GAAGCACTTCAATCAT-TCGGTTATATCCAAATCGGACCGATTAGTAAAAGGCTGGCCTG 18845 Query 143273 CGGAGACATAGGAAATGGTGCTATGGCAGAAGTTACAGAAAT 143314 ||| ||| |||| | ||||||||| | || || || |||| Sbjct 18844 CGGTGACTTAGGTATGGGTGCTATGTCTGAGGTCTCACAAAT 18803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902774916199200