Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq669 118 3e-21 seq17432 102 2e-16 >seq669 Length=42814 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| ||||| || || |||||||||||||| ||| || Sbjct 31838 CAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTCGGAT 31779 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||| || || ||||| ||| ||||| || Sbjct 31778 ACCATCGAAAACGTGAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATCAACAG 31719 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| || || || ||||| || || || | ||| | | ||||||||| | Sbjct 31718 AGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAACATT 31659 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| ||||| || Sbjct 31658 CAGAAGGAGTCGACTCTCCA 31639 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || || |||||||||||||| || || || ||||| Sbjct 32054 AAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTCCGATACCATCGAAAAC 31995 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || || ||||| ||| ||||| || ||||||||||| Sbjct 31994 GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAACAGAGACTTATCTTT 31935 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||| || || || | ||| | | ||||||||| |||| |||||||| Sbjct 31934 GCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAACATCCAAAAAGAGTCA 31875 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 31874 ACCCTTCA 31867 >seq17432 Length=31749 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||||||||||||||| || ||||| |||| |||||| Sbjct 24846 ACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTCGGACACCATCGAGAATGTAAAGGCT 24905 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| ||| ||||| ||| || | |||||||| || || Sbjct 24906 AAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAGCAACGATTGATCTTCGCTGGCAAA 24965 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| || | ||| | |||| ||||| | || || ||||| || ||||| Sbjct 24966 CAACTGGAAGACGGGCGCACTCTTTCCGACTACAATATTCAAAAGGAGTCGACCCTTCA 25024 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || || || |||||||| || || | || ||||| || ||||| | || | | Sbjct 24381 AAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTCCGACACCATTGAGAAC 24440 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||| || ||| || ||||| |||||||| || || ||| |||||||| ||||| Sbjct 24441 GTTAAGGCCAAA-ATCCAAGATAAAGAAGGCATCCCTCCCGACCAACAAAGACTGATCTT 24499 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||||||||||| || | ||| | ||||||| ||| | || || ||||| Sbjct 24500 CGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAACATTCAAAAGGAGTC 24559 Query 206364 TACTCTTCA 206372 || ||||| Sbjct 24560 GACCCTTCA 24568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || || || ||||| || || |||||||||||||| || ||| Sbjct 24141 CAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTCGGAC 24200 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || || ||||| |||||||| ||| ||||| || Sbjct 24201 ACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCAACAG 24260 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || || || | ||||| || | || | | ||||| || | Sbjct 24261 AGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATAATATT 24320 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| |||||||| Sbjct 24321 CAAAAGGAGTCGACTCTTCA 24340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180967619558745