Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq55013 181 4e-41 seq22457 143 1e-29 seq36628 114 5e-21 seq39681 111 6e-20 seq55168 96.9 1e-15 >seq55013 Length=475 Score = 181 bits (200), Expect = 4e-41 Identities = 272/394 (69%), Gaps = 33/394 (8%) Strand=Plus/Minus Query 2706 ATGCGTTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACGGGCACAC 2765 || || || ||||| || |||||| || || ||||| || || |||| |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 2766 TGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGCCCCGTGATT 2825 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 2826 TCTCTGCCTTCGCGAGTTTTGAATGGTGCGCGGCGGCATTCATCCATCCATTCGGTAACA 2885 | ||| || ||||| ||| |||| || || Sbjct 286 ---------------------------GGGCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 2886 CAGATCGGATGATTACGGTCTTTGCGGTAAATCCGACATGTACAGGATTCATCGTCCTGC 2945 | | ||||||| |||||||| ||||| || || || || |||| | |||||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 2946 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGACCAGCCATCAACG 3005 | ||| |||||||||||| || | ||||||||| || ||||| ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 3006 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCAT 3065 || || ||||| ||||| ||| ||||| || || ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 3066 GGATTAAGGCCGTACTGGTTGGCAACGATCAGCA 3099 ||||| ||||| || || ||||||| || |||| Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCA 43 >seq22457 Length=815 Score = 143 bits (158), Expect = 1e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 17087 AATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTATATGGCACAGAACCAGATTAC 17146 ||||| || || |||| |||||| | ||||| || |||||||| | | | | Sbjct 637 AATATTCCAGTAATGACAACAGAGTTGCTTGCTGAATTGTATGGCACGGTAATTAAAAAT 578 Query 17147 ATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTTA 17206 |||| || |||||| ||| ||| | | || ||||| | |||||||| | || | Sbjct 577 ATCCACAATAATTTCTCTCGTAATGCGGATCGGTTTGTCGTTGGTAAGCATCATTTCAAA 518 Query 17207 CTTGAGAATGAGGAGTTGCGCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGTGAAA 17266 || || ||| || |||| |||||||||| || ||| |||| ||||||||| Sbjct 517 CTAGAAGGTGAAGAACTGCGTGAATTTAAGCGCAAACCCTCTAAAAGAGGGTCTGTGAAA 458 Query 17267 ATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCA 17326 || | ||| |||| || || |||| ||||| |||||||| ||||| ||||| || Sbjct 457 ATAACTGATAATGTTCATTCGCTTTTCCTGTGGACTGAACGCGGCGCAGCACGTCATGCC 398 Query 17327 AAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTT 17385 |||||||| ||||| ||||| ||||||||||| || ||||| | || || || ||||| Sbjct 397 AAAATGCTAGAAACCGATCAAGCATGGGAAGTATTTGAAAAGTTAGAGGATTGTTATTT 339 >seq36628 Length=791 Score = 114 bits (126), Expect = 5e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 17287 CCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 17346 ||| || |||||||||||||| || ||||| |||||| | |||||||| ||||| |||| Sbjct 577 CCTTATTCTCTGGACAGAACGAGGCGCAGCACGTCACACCAAAATGCTAGAAACCAATCA 518 Query 17347 GGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 17387 ||||||||||||||||||||| | ||||| || ||||||| Sbjct 517 GGCATGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 477 >seq39681 Length=3370 Score = 111 bits (122), Expect = 6e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 17287 CCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 17346 ||| || |||| ||||||||| || ||||| |||||||| |||||||| ||||| ||||| Sbjct 54 CCTTATTCTCTAGACAGAACGAGGCGCAGCACGTCACGCCAAAATGCTAGAAACCGATCA 113 Query 17347 GGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 17387 ||||||||||| |||||||| | ||||| || ||||||| Sbjct 114 AGCATGGGAAGTATTCGAAAAGTTAGAAGATTGTTATTTCA 154 >seq55168 Length=2163 Score = 96.9 bits (106), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 17244 TGTCTTTAAGACCTTCTGTGAAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAG 17303 |||||||||||| || | |||| ||| || ||||| || || || ||||| | Sbjct 1932 TGTCTTTAAGACATT---TACAAATTTCCCACAAAACACGCTCACTTATTCTGTGGACCG 1988 Query 17304 AACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCG 17363 ||| | ||||| || || || |||||||| ||||| ||||| || ||||||||||||| Sbjct 1989 GACGTGAGGCAGCACGCCATGCCAAAATGCTAGAAACCGATCAAGCTTGGGAAGTGTTCG 2048 Query 17364 AAAAACTGGAAGACTGCTATTTCA 17387 |||| | ||||| || ||||||| Sbjct 2049 AAAAGTTAGAAGATTGTTATTTCA 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200374307469700