Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq54669 113 1e-19 seq13760 86.0 1e-11 >seq54669 Length=12211 Score = 113 bits (124), Expect = 1e-19 Identities = 251/369 (68%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 24412 GGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGAGATTCGTTCAGGTGATGCAGTA 24471 ||||||||| || || || ||||| | || || |||||| ||||| || | Sbjct 12088 GGTATTAATGCTGGTCGCATCCGTGCGCAAGGTAGTGGAATTCGTCATGGTGAAGCTTTT 12029 Query 24472 CATACTGGGTTGATTCC-TTTTATCGCAGCAACTGCTAAGAC--CGTTAAAAGCT-GCTC 24527 ||||| || | ||||| |||||| | || | | |||| || ||||| || | || Sbjct 12028 CATACCGGTTGTATTCCGTTTTATA--AACACTTTC--AGACTGCGGTAAAATCTTGTTC 11973 Query 24528 ACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACTTCCCATTGTGGCATTTGGAGTT 24587 || || ||||||||||||||||||||||| | || || |||||||||| ||| | Sbjct 11972 TCAAGGAGGTGTGCGTGGTGGTGCAGCAACGTTATTTTTTCCCCTGTGGCATTTAGAGAT 11913 Query 24588 TGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGTTTAACCGTGTACGTCAACT 24647 || || || | ||| | ||||||||| ||| || ||| ||||| || || | Sbjct 11912 AGAAAATCTGTTGGTATTAAAAAATAACCGTGGTGTTGAAGATAATCGTGTTCGCCATAT 11853 Query 24648 AGACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTTTGGTTGATGGAAAGA--AC 24705 || || | | ||| | || ||| | | ||||| ||||| || | || || | Sbjct 11852 GGATTACGGGGTACAAATTAATAAATTTATGTATCAGCGTTTAGT--AAAAAACGAAGAG 11795 Query 24706 ATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAGCATTCTGTTCTGACCAA 24765 || || | |||||||| ||| ||||| || |||||||||| |||| | |||| ||| Sbjct 11794 ATAACTCTATTTAGTCCATCTGACGTTCCGGGTTTATATGAAGCTTTCTTTGCTGATCAA 11735 Query 24766 AAAGAATTT 24774 || |||||| Sbjct 11734 AATGAATTT 11726 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26641 GAAGGTGTTCGTTTTTATGCAAGCTTTGCGTGTTCTTGGGCGTTTGCTGAAAACAATCTA 26700 |||| |||||| ||||||| || ||||| ||||| | || ||||||||| | || Sbjct 9841 GAAGCTGTTCGCTTTTATGTGAGTTTTGCCTGTTCGTTTGCTTTTGCTGAACGTGAATTA 9782 Query 26701 ATGGAAGGTAATGCTAAGATTATCCGTCTAATCTGTCGTGATGAAAACCTACACCTAGCA 26760 ||||||||||||||||| |||||| | ||| |||||||||| ||||| || || Sbjct 9781 ATGGAAGGTAATGCTAAAATTATCAAGTTGATCGCTCGTGATGAAGCGCTACATCTTGCC 9722 Query 26761 GCAACCCA 26768 | ||| || Sbjct 9721 GGAACACA 9714 >seq13760 Length=57140 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 299032 ATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACA 299091 || ||||| ||||| |||||||| || || || ||||| |||||| ||||| | | Sbjct 52057 ATATTGGTTCATTGTTGGCTGGTACCAAATACCGCGGTGATTTTGAAAAACGCTTTAAAG 51998 Query 299092 ATTTGCTAAAAGAACTAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATA 299151 ||| ||||| || || | || | |||||| ||| | || |||||||||||||||| Sbjct 51997 TATTGTTAAAACAATTAGAAGAAGATAAAAATAGCATTCTATTTATTGATGAAATTCATA 51938 Query 299152 TTATGGTTGGGGCTGGTTCCGC 299173 ||| |||| ||||| || || Sbjct 51937 CTATTATTGGCGCTGGATCTGC 51916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114366135258805