Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq54669 156 4e-33 seq13760 91.5 2e-13 >seq54669 Length=12211 Score = 156 bits (172), Expect = 4e-33 Identities = 239/338 (71%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 138564 GGACTGAACAAAGTAATGTAATCGTTCTTTCCAAAACGTTCCATCATCAAATCATTCAGC 138623 ||||| || | ||| || | ||||| ||| | ||||| | ||| || | ||| | Sbjct 11778 GGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATACATAAATTTATTAATT 11837 Query 138624 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138683 || || || ||||||||||| |||| || || ||||| || || ||||||||| || Sbjct 11838 TGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAAT 11897 Query 138684 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138743 || | |||||||| | || |||||||| | ||| || | || || || || ||| Sbjct 11898 ACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCA 11957 Query 138744 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138803 || | || || || ||||| ||||| || ||||||||||| ||||| |||| |||||| Sbjct 11958 CGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTGTTTATAAAACGGAATA 12017 Query 138804 ACACCAGTATGACGTACTTCACCCATG-CCAATCTTAGAACCTTCAGCACGAATCATACC 138862 ||| |||||| ||||| ||||| | ||| | ||||| ||||| || ||| Sbjct 12018 CAACCGGTATGAAAAGCTTCA-CCATGACGAATTCCACTACCTTGCGCACGGATGCGACC 12076 Query 138863 AACGTTAATACCAATTCCAGCGCGTTTAGAGATATATT 138900 | | ||||||||||| || ||||| | || | ||||| Sbjct 12077 AGCATTAATACCAATCCCCGCGCGCTGCGAAACATATT 12114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 136529 AATATATTGAGTGCCTTTAAGGTGAAGCTGCTCATCACGTGCAATAAACTTCATAATCTT 136588 ||||| || || || ||| || ||| |||||||| || || ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 136589 GGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCAAAAGATAC 136648 |||||||||||||| | || || |||| | || ||| | ||| |||||| || Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC--AGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 136649 ATAAAAACGAATAGCTTCTAAGGCATT 136675 |||||| |||| ||||||||| ||||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATT 9850 >seq13760 Length=57140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 69581 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATACCA 69640 ||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||||| ||| Sbjct 18360 TTGGAGCGGGCAATGGGAATCGAACCCACATCATCAGCTTGGAAGGCTGAGGTAATGCCA 18301 Query 69641 TTATACGATATCCGC 69655 |||||| || |||| Sbjct 18300 TTATACCATGCCCGC 18286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533201794626600