Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_026607.2 Length=159914 Score E Sequences producing significant alignments: (Bits) Value seq54669 179 4e-40 seq11509 114 1e-20 >seq54669 Length=12211 Score = 179 bits (198), Expect = 4e-40 Identities = 270/384 (70%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311 ||| || | ||| ||||| | || || || | ||| |||| ||| || || || || || Sbjct 11822 CATAAATTTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACC 11881 Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371 ||| || |||||||||||||| ||||| | ||| | |||||||| ||| || | | Sbjct 11882 ACGGTTATTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAA 11941 Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431 || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct 11942 CGTTGCTGCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTG 12001 Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491 ||| | || ||||| || ||||| |||| |||| || |||| |||| Sbjct 12002 TTTATAAAACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTG 12061 Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 133551 || || || ||| || || || || || || || |||| | ||| || || || Sbjct 12062 CGCACGGATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGAT 12121 Query 133552 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 133611 | | || ||||| ||||||| || || ||| ||| || | ||||||||| Sbjct 12122 TGCGCTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGA 12181 Query 133612 ACTAAACTGACGAGTAGGAGTACG 133635 ||||| || || ||||| ||||| Sbjct 12182 GCTAAATTGGCGGGTAGGCGTACG 12205 Score = 105 bits (116), Expect = 7e-18 Identities = 196/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 131574 TTACGCATAATATGCGTGTAAGAACGAGAGTGAATCGTTTCAGAGAAAGTCCAAGTCTGG 131633 ||||| ||||||||||| ||||||||||| || | || ||| | || | ||| |||| Sbjct 10068 TTACGAATAATATGCGTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTCC 10127 Query 131634 TTCCAAGTATCTAATGACGGGTCAGAAATCAAAGC--AGAAAGAACTGCAGCAGGTGCCC 131691 |||||| || | | || |||||| || | | |||| | || | ||| Sbjct 10128 ACCCAAGTTTCCAGTTCAGGAATAGAAATTAATGGTAATAAAGCAATGTTAGGGCTGC-- 10185 Query 131692 GTCCTTGAATACTGTCTAAAAGAGACTGATATTTCAAGTTGTTAATAAAAATAttttttt 131751 |||| || || ||||| || | |||||||| || || |||||||||||||||||| Sbjct 10186 GTCCCTGGATTGAATCTAACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTTTT 10245 Query 131752 GATGCTCTGGGAGTTTATCAAATTGAGCTCTGTCA-GT-CATCAAGTTAACTTCTTCTGG 131809 |||||| || | | || | | ||| ||| || || || | || ||||| || Sbjct 10246 CATGCTCAGGTAAAGCAGCATAGTCGATTCTATCACGTGCAACA--TCAATCTCTTCCGG 10303 Query 131810 GCGCCAGAAAAATGAGAGCTGCTTTTCAATCAGTTCTTCAAA 131851 ||||| ||||| || ||||| |||||||||| || |||||| Sbjct 10304 CCGCCAAAAAAAGGAAAGCTGTTTTTCAATCAATTTTTCAAA 10345 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 131174 AATATATTGAGTACCCTTAAGATGCAACTGTTCATCACGAGCGATGAACTTCATAATCTT 131233 ||||| || || || |||||| | | ||||||||||||||| ||||| ||||| || Sbjct 9707 AATATGCTGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTT 9766 Query 131234 GGAGTTGCCTTCCATTATTTCCATATTCTTATGGAAGTTAAAGGTACAAGCAAAACTCAC 131293 | || |||||||||| || || ||| | || ||| | ||| ||||||||||| Sbjct 9767 AGCATTACCTTCCATTAATT-CACGTTC--AGCAAAAGCAAACGAACAGGCAAAACTCAC 9823 Query 131294 ATAAAAACGAATTGCTTCAAGACCATTGA-TGACATGCAAACACAAATAAAGC-GCTTT 131350 |||||| |||| ||||| | |||||| ||| || ||| ||||| ||| ||||| Sbjct 9824 ATAAAAGCGAACAGCTTCTAATGCATTGACACTCAT-CAGACATAAATACAGCTGCTTT 9881 >seq11509 Length=51200 Score = 114 bits (126), Expect = 1e-20 Identities = 73/78 (94%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 62448 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 62507 |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||| Sbjct 32004 TTGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCTCTAAC 31945 Query 62508 C-ACTGAGCTAAGGGGCC 62524 | |||||||||||||||| Sbjct 31944 CAACTGAGCTAAGGGGCC 31927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511236475978800