Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11840 224 1e-53 seq4930 114 2e-20 seq12913 105 9e-18 seq3673 105 9e-18 >seq11840 Length=1854 Score = 224 bits (248), Expect = 1e-53 Identities = 364/524 (69%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | |||| ||| | || |||||||| || || || || | || Sbjct 729 TGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATCGAC 788 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || || | || || || || || || || ||||| || |||| | | |||| Sbjct 789 TCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGACTA 848 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | | |||| | | ||| || || || || | ||||| ||| || |||| | Sbjct 849 TTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCAGTT 908 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || | ||| | ||||||||| ||||| || ||| | || || | |||| Sbjct 909 GGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCATAT 968 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || ||||||||||| || || ||| | ||||||||| ||||| || || |||||||| Sbjct 969 GTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAATAT 1028 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || || ||||||| |||| || || |||||| |||| || || || | | | Sbjct 1029 ATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAAGGGCTGACGC 1088 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | ||||||||| || ||||| |||||||| ||||||||||| |||| ||||||||| Sbjct 1089 ATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTCTTA 1148 Query 69139 TTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 || || | || | ||| || | |||||| || |||| || || |||||||| |||||| Sbjct 1149 TTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGATTT 1208 Query 69199 CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA 69242 | | |||||| |||| || || ||||| |||||| || Sbjct 1209 CTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAA 1252 Score = 105 bits (116), Expect = 9e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 |||||||||| | ||||| ||||| ||||| || |||||| || | | ||| ||| Sbjct 1564 TTTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACAGTCGTGAAGTCCGGGA 1623 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || || | ||||||||||| |||||||| | || ||| || || |||||| || Sbjct 1624 CACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTACGCGACGCATAAACAGG 1683 Query 69613 TCGGGAATCCAAAGAGCTAT-AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 || ||||||||||| || || ||| |||||||||| ||| ||||| ||| || || Sbjct 1684 TCCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCTCTTCTGATCCGGTGTT 1742 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| | | ||| | |||| | | || | ||||| || || || ||||| || Sbjct 1743 TTTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCTCCAGGTATATGGC 1799 >seq4930 Length=2674 Score = 114 bits (126), Expect = 2e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA 70074 || |||||||||||||| ||||| | ||| || |||||||| || || | || || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 70075 TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 ||| | ||||| || | | ||| | ||||| |||||| ||||||||||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA- 70193 || || |||||||||| || | | || | || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 70194 TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGT 70230 |||||| ||||| || ||||| || |||| |||||| Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGT 216 >seq12913 Length=27019 Score = 105 bits (116), Expect = 9e-18 Identities = 128/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 39264 TGATTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTT-GT--GACATAACT 39319 |||||| ||| |||||| | || | | || | || ||| |||| || | |||||| Sbjct 26847 TGATTCAATTAGAAGTCAGCGTCGAGAACGAACTTATGATCCTCTTTGTTGGCCATAACA 26906 Query 39320 CCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 39379 || |||| || || ||||| || |||||||| || ||||| || || ||||||||||| Sbjct 26907 CCACTTTTCTGATACTCACCGACCCGTTTCTCAAAGAAATTGGTCTTTCCTTCCAATGAA 26966 Query 39380 ATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 || | ||||||||||||||||||||| ||| ||| || | | ||| ||| Sbjct 26967 ATTTGTTCCATGAAATCAAACGGATTGTTTGAATTGTAGTACTGTTTGAAT 27017 >seq3673 Length=14246 Score = 105 bits (116), Expect = 9e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| |||||| || || || |||||| |||||||||||||||||| || ||| ||||| Sbjct 13811 CCAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAA 13752 Query 40059 AATATTTTTCATCGGGT-GTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACT 40117 | | |||||| || | ||||| ||||||||| |||| ||| || | ||||| Sbjct 13751 AGTGTTTTTC-TCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACC 13693 Query 40118 TCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATAT 40177 ||||| ||||||| || || ||||| || | || ||||| | ||| || || || Sbjct 13692 TCTTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTAC 13633 Query 40178 TGTATTGGAAAAATAACAAA 40197 | |||||||| | ||||| Sbjct 13632 TCAATTGGAAACACCACAAA 13613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686425001545800