Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq54669 185 9e-42 seq11509 114 1e-20 >seq54669 Length=12211 Score = 185 bits (204), Expect = 9e-42 Identities = 275/387 (71%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 ||| || | ||| ||||| | |||||||| | ||| |||| || || || || ||||| Sbjct 11822 CATAAATTTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACC 11881 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 ||| || ||||||||||| || ||||| | ||| | |||||||| ||| || | | Sbjct 11882 ACGGTTATTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAA 11941 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct 11942 CGTTGCTGCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTG 12001 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 ||| | || ||||| || ||||| |||| |||| || |||| |||| Sbjct 12002 TTTATAAAACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTG 12061 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 15133 || || || ||| || || || || || || || |||| | ||| || || || Sbjct 12062 CGCACGGATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGAT 12121 Query 15134 ACTGTTACTTGCT---GCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACA 15190 || |||||| ||||| ||||||| || || ||| ||| || | |||||| Sbjct 12122 --TG-CGCTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACA 12178 Query 15191 AGAACTAAACTGACGAGTAGGAGTACG 15217 ||| ||||| || || ||||| ||||| Sbjct 12179 AGAGCTAAATTGGCGGGTAGGCGTACG 12205 Score = 102 bits (112), Expect = 8e-17 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 12481 TTACGCATAATGTGCGTGTAAGAACGAGAGTGAATCGTTTCAGAGAAAGTCCAAGTCTGG 12540 ||||| ||||| ||||| ||||||||||| || | || ||| | || | ||| |||| Sbjct 10068 TTACGAATAATATGCGTATAAGAACGAGAATGTAAGGTCTCAAAAAATGACCAGGTCTCC 10127 Query 12541 TTCCAAGTATCTAATGACGGGTCAGAAATCAAAGC--AGAAAGAACTGCAGCAGGAGCCC 12598 |||||| || | | || |||||| || | | |||| | || ||| | Sbjct 10128 ACCCAAGTTTCCAGTTCAGGAATAGAAATTAATGGTAATAAAGCAATGTT--AGGGCTGC 10185 Query 12599 GTCCTTGAATACTGTCTAAAAGAGACTGATATTTCAAGTTGTTAATAAAAATAttttttt 12658 |||| || || ||||| || | |||||||| || || |||||||||||||||||| Sbjct 10186 GTCCCTGGATTGAATCTAACAGGGTTTGATATTTTAAATTACTAATAAAAATATTTTTTT 10245 Query 12659 GATGCTCTGGGAGTTTATCAAATTGAGCTCTGTCA-GT-CATCAAGTTAACTTCTTCTGG 12716 |||||| || | | || | | ||| ||| || || || | || ||||| || Sbjct 10246 CATGCTCAGGTAAAGCAGCATAGTCGATTCTATCACGTGCAACA--TCAATCTCTTCCGG 10303 Query 12717 GCGCCAGAAAAATGAGAGCTGCTTTTCAATCAGTTCTTCAAA 12758 ||||| ||||| || ||||| |||||||||| || |||||| Sbjct 10304 CCGCCAAAAAAAGGAAAGCTGTTTTTCAATCAATTTTTCAAA 10345 >seq11509 Length=51200 Score = 114 bits (126), Expect = 1e-20 Identities = 73/78 (94%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826 |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||| Sbjct 32004 TTGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCTCTAAC 31945 Query 103827 C-ACTGAGCTAAGGGGCC 103843 | |||||||||||||||| Sbjct 31944 CAACTGAGCTAAGGGGCC 31927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505432566625800