Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq54669 127 5e-24 seq13760 86.0 1e-11 >seq54669 Length=12211 Score = 127 bits (140), Expect = 5e-24 Identities = 329/492 (67%), Gaps = 12/492 (2%) Strand=Plus/Plus Query 259914 AAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCCAGGGACTTCATTAGGACTAAA 259973 |||||| |||||||||| |||| |||||||||| || || || ||| |||||||| Sbjct 11726 AAATTCATTTTGATCAGCAAAGAAAGCTTCATATAAACCCGGAACGTCAGATGGACTAAA 11785 Query 259974 GAATGTAATAT--TCTTTCCATCAACCAAACGTTGATACAAAGTTTTGTTTACTTGGAAA 260031 | || || | || || | || ||||| ||||||| | ||| || | ||| | Sbjct 11786 TAGAGTTATCTCTTCGTTTTTT--ACTAAACGCTGATACATAAATTTATTAATTTGTACC 11843 Query 260032 CAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTTGTTATTTTTAAGGACTACC 260091 | || |||| || || ||||| ||| ||| ||| ||||||||| | || | | Sbjct 11844 CCGTAATCCATATGGCGAACACGATTATCTTCAACACCACGGTTATTTTTTAATACCAAC 11903 Query 260092 AAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACAGTTGCTGCACCACCACGAACA 260151 | || || | || |||||||||| || || | ||||||||||||||||| ||| Sbjct 11904 AGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAACGTTGCTGCACCACCACGCACA 11963 Query 260152 CCACCTTGTGAAC-AGCTTTTA--ACAGTCTTAGCAGTAGCTGCAATGAACGGAATCAGC 260208 || ||||| |||| || ||||| |||||| | ||| | || |||||||| Sbjct 11964 CCTCCTTGAGAACAAGATTTTACCGCAGTCTGA-AAGTGTTTATAA--AACGGAATACAA 12020 Query 260209 CCAGTGTGTACTGCATCACCTGAACGAATCTCGGAGTCCAGAGCACGAATGCGGCCCATA 260268 || || || | || ||||| |||||| | | | ||||| ||||| || | Sbjct 12021 CCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTGCGCACGGATGCGACCAGCA 12080 Query 260269 TTAATACCAAGACCAGCTTTACGTGAAATATAACGTAGAATAGCG-TGGTTAGAGGAACC 260327 |||||||||| || || | |||| ||| || || ||| | | | | || | Sbjct 12081 TTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGATTGCGCTTGCT-GTGGCATT 12139 Query 260328 AATACTATCCAAGCTGTCACCAACGTTTAGTACTACACAAGAGCTAAACTGACGTGTATT 260387 ||| |||||| ||||| ||| | || | ||||||||||||||| || || ||| Sbjct 12140 GATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGAGCTAAATTGGCGGGTAGG 12199 Query 260388 TGTACGTAGACC 260399 ||||||| ||| Sbjct 12200 CGTACGTACACC 12211 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 257920 TGGGTTGCTGCTAGGTGTAGGTTTTCATCACGACAGATTAGACGGATAATCTTAGCATTA 257979 || ||| | || || ||||| |||||||||| ||| | |||||| ||||||||| Sbjct 9714 TGTGTTCCGGCAAGATGTAGCGCTTCATCACGAGCGATCAACTTGATAATTTTAGCATTA 9773 Query 257980 CCTTCCATTAGATTGTTTTCAGCAAACGCCCAAGAACACGCAAAGCTTGCATAAAAACGA 258039 |||||||||| | ||||||||| || | ||||| ||||| || ||||||| ||| Sbjct 9774 CCTTCCATTAATTCACGTTCAGCAAAAGCAAACGAACAGGCAAAACTCACATAAAAGCGA 9833 Query 258040 ACACCTTCAAGAATG--TTAATACTATTCAGACACAA 258074 ||| |||| |||| || | ||| ||||||| || Sbjct 9834 ACAGCTTC--TAATGCATTGACACTCATCAGACATAA 9868 >seq13760 Length=57140 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 332160 GCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGT 332219 || || ||||| |||| ||| |||||||||||||||| || | ||| |||||| | | Sbjct 51916 GCAGATCCAGCGCCAATAATAGTATGAATTTCATCAATAAATAGAATGCTATTTTTATCT 51975 Query 332220 TTCTTTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTA 332279 | | || || ||||| ||| | | ||||| |||||| ||||| || || || ||| Sbjct 51976 TCTTCTAATTGTTTTAACAATACTTTAAAGCGTTTTTCAAAATCACCGCGGTATTTGGTA 52035 Query 332280 CCAGCAGTCAATGCACCAACAT 332301 ||||| ||||| ||||| || Sbjct 52036 CCAGCCAACAATGAACCAATAT 52057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113026303209560