Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3673 105 5e-18 seq7653 102 6e-17 seq13271 82.4 6e-11 >seq3673 Length=14246 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 |||| |||||| ||||| | ||||| |||||||||||| | || ||||| |||||| Sbjct 13592 CTTAAAGAAAACCCGTCCCGTTTTGTGGTGTTTCCAATTGAGTACACAGACATTTGGCAA 13651 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 ||||| || | ||| |||| || || ||||||| |||||| || || | | || Sbjct 13652 ATGTATAAGAGAGCGGAGGCCTCTTTCTGGACAGTAGAAGAGGTAGACCTCGGAAGGGAT 13711 Query 43799 TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCG 43858 | | | |||| | |||| || ||||||||| ||||| || |||||||| Sbjct 13712 CTCAAAGACTGGAATTCATTGAATAGTAGAGAAAAACACTTTATTTCACACGTTTTGGCA 13771 Query 43859 TTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 |||||||| || || || || ||||| |||||| |||| Sbjct 13772 TTTTTTGCCGCTTCTGATGGTATTGTCAACGAAAATCTGGT 13812 >seq7653 Length=14825 Score = 102 bits (112), Expect = 6e-17 Identities = 212/316 (67%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 40719 TTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAG 40778 ||||||| ||| || |||||||| | |||||||| | ||| ||||| | ||||| Sbjct 5468 TTTTGGAGAGGAGTTCTCGAAGAACTTCTTTGGTTTATAAGAGGCAGTACTGACGCTAAA 5527 Query 40779 AAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCT 40838 | |||||| || || || | || ||| | | || |||| || | | | | Sbjct 5528 GAGTTATCAAAAGTTGGGGTCAATATATGGGAGGGAAACGGTTCCCGCACTTTTCTCGAT 5587 Query 40839 AGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCG 40898 || | ||||| ||| || || ||||| ||| | || ||||||||||| ||||| | | Sbjct 5588 AGTCTTGGATTTACAGACAGAGAAGAAGGAGATTTAGGACCTGTTTATGGCTTTCAATGG 5647 Query 40899 CGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGAT 40958 |||||||||| || |||||||| | || || ||||||||| ||| || ||||| Sbjct 5648 AGACATTTTGGCGCCAAATATGATAATAAAGACACTGATTATAGTAATTGTGGTGTGGAT 5707 Query 40959 CAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTG 41018 || | || || || |||| | ||| | |||| || | | || || ||| | Sbjct 5708 CAGCTCAAGGCTGTAATCAATACATTGAAAACTAATCCGAATGACAGGCGAATGATAATC 5767 Query 41019 TGCGCGTGGAACCCAA 41034 || ||||||| |||| Sbjct 5768 TGTTCGTGGAATCCAA 5783 >seq13271 Length=209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 |||| |||||| ||||| | ||||| || |||||||| | || ||||| |||||| Sbjct 14 CTTAAAGAAAACCCGTCCCGTTTTGTGGT--TTCCAATTGAGTACACAGACATTTGGCAA 71 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGA 43785 ||||| |||| ||| |||| || || ||||||| ||||||||| || Sbjct 72 ATGTATAAAAGAGCGGAGGCCTCTTTCTGGACAGTAGAAGAAGTAGA 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397183065101725