Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17432 116 3e-21 seq669 86.0 5e-12 >seq17432 Length=31749 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | ||||||||| | || || || |||||||| || || ||| Sbjct 24592 CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAA 24533 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| ||||||| | |||||| |||||| | || || | ||||| || || || Sbjct 24532 AGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGG 24473 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||| ||| || | | | || | ||||| | || || || Sbjct 24472 ATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACC 24413 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||| || |||||||| || |||||||||||||| Sbjct 24412 TCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||||||| | || || || ||||||||||| ||||| Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || ||||||| || ||||| |||||| | || ||||||||||||||||| || Sbjct 24760 AGTGTTCGGC-CGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGG 24702 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||| || || || |||| | | || | ||||| | | || || Sbjct 24701 AATACCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCAC 24642 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | || || |||| ||||| || || |||||||| Sbjct 24641 TTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||||||| | || || || ||||||||||| || || Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || ||||||| || ||||| || || | || || | |||||||||||| || Sbjct 24304 AGTGTTCGGC-CGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGG 24246 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| ||||| || ||| ||| || | | | || | ||||| | | || || Sbjct 24245 AATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCAC 24186 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | || || |||||||| || || || || ||||| Sbjct 24185 TTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || |||||||||||||||||| | ||||| ||||||| Sbjct 25030 ACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAAAGAGTGCGCCCGTCTTCC 24971 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| | || | || || |||||||| || | || ||||| || Sbjct 24970 AGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTCTTTGTCTTGA 24911 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || ||||| | ||| || | || Sbjct 24910 ATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCACTTCCAAAGTGATGGTCTTT 24851 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| || |||||||| Sbjct 24850 CCGGTCAATGTCTTCACGAATATTTGCAT 24822 >seq669 Length=42814 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | || ||||| | || || || || ||||| ||||| || Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| | |||||| || || | || | | ||| |||||||| || Sbjct 32357 AGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGGA 32416 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||| || | |||| | |||||| | || || || Sbjct 32417 ATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCGACC 32476 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| || || || || ||||||||||| |||||||| Sbjct 32477 TCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCAT 32523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424642595555640