Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq55013 178 5e-40 seq39681 116 1e-21 seq36628 116 1e-21 seq11509 100 1e-16 seq55168 87.8 7e-13 >seq55013 Length=475 Score = 178 bits (196), Expect = 5e-40 Identities = 272/394 (69%), Gaps = 33/394 (8%) Strand=Plus/Minus Query 5617 ATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCGAGACGGGCACAC 5676 || ||||| ||||| || |||||| || || ||||| || || || | |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 5677 TGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCCCCGTGATT 5736 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 5737 TCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACG 5796 || ||| || ||||| ||| | || || || Sbjct 286 ------------------------GG---GCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 5797 CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATTGTCCTGC 5856 | | ||||||| ||||| || ||||| || ||||| ||||||| | || ||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 5857 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACG 5916 | ||| |||||||||||| || | ||||||||| |||||||| ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 5917 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCAC 5976 || || ||||| ||||| ||| ||||| || || ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 5977 GGATTAAGGCCGTACTGGTTGGCGACGATCAGCA 6010 ||||| ||||| || || |||| || || |||| Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCA 43 >seq39681 Length=3370 Score = 116 bits (128), Expect = 1e-21 Identities = 104/128 (81%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 18756 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGAGGCGCAGCCCG 18814 ||||||||| |||| | || ||| ||| || |||| |||||||||||||||||| || Sbjct 28 GGGTTAGTTAATAAACACACCA-CTCACCTTATTCTCTAGACAGAACGAGGCGCAGCACG 86 Query 18815 TCACGCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAAACTGGAAGACTG 18874 |||||| |||||||| ||||| ||||| || ||||| || |||||||| | ||||| || Sbjct 87 TCACGCCAAAATGCTAGAAACCGATCAAGCATGGGAAGTATTCGAAAAGTTAGAAGATTG 146 Query 18875 CTATTTCA 18882 ||||||| Sbjct 147 TTATTTCA 154 >seq36628 Length=791 Score = 116 bits (128), Expect = 1e-21 Identities = 104/128 (81%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 18756 GGGTTAGTTGGTAAAAATGCCCGCTC-CCTCATCCTCTGGACAGAACGAGGCGCAGCCCG 18814 ||||||||| |||| || ||| ||| || ||||||||||||||||||||||| || Sbjct 602 GGGTTAGTTAATAAACCA--CCACTCACCTTATTCTCTGGACAGAACGAGGCGCAGCACG 545 Query 18815 TCACGCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAAACTGGAAGACTG 18874 |||| | |||||||| ||||| ||||||| ||||| ||||||||||| | ||||| || Sbjct 544 TCACACCAAAATGCTAGAAACCAATCAGGCATGGGAAGTGTTCGAAAAGTTAGAAGATTG 485 Query 18875 CTATTTCA 18882 ||||||| Sbjct 484 TTATTTCA 477 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 21679 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 21737 ||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 21738 TCCAGCAAGGGCCACCA 21754 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 >seq55168 Length=2163 Score = 87.8 bits (96), Expect = 7e-13 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 18777 CGCTCCCTCATCCTCTGGACAGAACGAGGCGCAGCCCGTCACGCAAAAATGCTCGAAACT 18836 ||||| || || || ||||| | ||| | ||||| || || || |||||||| ||||| Sbjct 1967 CGCTCACTTATTCTGTGGACCGGACGTGAGGCAGCACGCCATGCCAAAATGCTAGAAACC 2026 Query 18837 GATCAGGCGTGGGATGTGTTCGAAAAACTGGAAGACTGCTATTTCA 18882 ||||| || ||||| ||||||||||| | ||||| || ||||||| Sbjct 2027 GATCAAGCTTGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184321388560710