Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq214 149 7e-31 seq17432 147 2e-30 seq669 127 2e-24 >seq214 Length=17119 Score = 149 bits (164), Expect = 7e-31 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| ||||||||| | || || ||||| || ||||||||||| ||| | | Sbjct 1183 AATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAGCCCAG 1124 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || ||||||||||||||||| || ||||| || || Sbjct 1123 CGATACTATTGAGAATGTAAAGGCAAAGATTCAGGACAAGGAGGGCATACCTCCGGATCA 1064 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATA 27583 |||||| | || |||||||| || ||| | || || | | || | |||| || || | Sbjct 1063 GCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAGC-GATTACA 1005 Query 27584 ATGTCCAAAAGGAATCCACTCTTCAT 27609 | |||||||||| || || |||||| Sbjct 1004 ACATCCAAAAGGAGTCGACCCTTCAT 979 >seq17432 Length=31749 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||| || | ||||| ||||| || ||| | || || ||| | Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24652 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || ||||||| |||||||||||||| ||||| |||||||| || || Sbjct 24653 GGACACCATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATCA 24712 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || || || || ||||| || || | || || || | |||||||| Sbjct 24713 ACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATAA 24772 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | | |||||||| || ||||||||| | || | ||||| Sbjct 24773 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCT 24811 Score = 129 bits (142), Expect = 7e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || ||| | ||||| || || ||||| |||||||| ||| | Sbjct 23745 AATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCCCTC 23804 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || ||||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 23805 CGACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGACCA 23864 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || || ||||| || || | || || || | || || || Sbjct 23865 ACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTACAA 23924 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||||||| || || |||||| | || | ||||| Sbjct 23925 CATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCT 23963 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || ||||| || || || || |||||||| ||| | Sbjct 24365 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTC 24424 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| ||||| || || || || || || ||||| ||||| Sbjct 24425 CGACACCATTGAGAACGTTAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCCGACCA 24484 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || || || || || || | || || | || || || | || ||||| Sbjct 24485 ACAAAGACTGATCTTCGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAA 24544 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 | |||||||| || || |||||| Sbjct 24545 CATTCAAAAGGAGTCGACCCTTCAT 24569 >seq669 Length=42814 Score = 127 bits (140), Expect = 2e-24 Identities = 161/220 (73%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 27396 TATTACT-ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 |||||| | ||||||||| ||||| || || || ||||| |||||||| |||||||||| Sbjct 32534 TATTACAGAAAATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGG 32475 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | ||| | ||| | || | |||| | ||||| || ||||||||||| || || |||| Sbjct 32474 TCGAGCCCTCTGACACTATCGAAAATGTAAAGGCAAAGATTCAGGACAAAGAAGGCATTC 32415 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 |||| || |||||| | | || ||||| || || || | || || | || || || Sbjct 32414 CTCCGGATCAGCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCT 32355 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || || || | || ||||| || || |||||| |||| Sbjct 32354 CTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTAGT 32315 Score = 125 bits (138), Expect = 8e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || ||||| ||||| |||||| | || || ||| | Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | ||||| || |||||||||||||| || |||||||| || || Sbjct 32010 CGATACCATCGAAAACGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCA 31951 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || || || | ||||| | || || || | || || || Sbjct 31950 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31891 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 ||||||| || || || |||||| ||||| | ||| Sbjct 31890 CATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGT 31854 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| || ||||| ||||| |||||| | || || ||| | Sbjct 31842 AATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTC 31783 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| ||||||| || |||||||||||||| || |||||||| || || Sbjct 31782 GGATACCATCGAAAACGTGAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATCA 31723 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || || || | ||||| | || || || | || || || Sbjct 31722 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31663 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| || ||||| ||| Sbjct 31662 CATTCAGAAGGAGTCGACTCTCCAT 31638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569908723256400