Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq17432 143 2e-29 seq214 114 8e-21 seq669 102 5e-17 >seq17432 Length=31749 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||| ||||| |||||||||||| ||||| || || Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| ||||||| |||||||| ||||| || || | ||||||||| ||||| || Sbjct 24760 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGA 24701 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| ||| ||| | || ||| | ||| ||||| |||||| Sbjct 24700 ATACCCTCTTTGTC-CTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCAC 24642 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| || ||||| || || || ||||| Sbjct 24641 TTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCAT 24594 Score = 141 bits (156), Expect = 6e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||| || || ||||||||||||||| ||||| || Sbjct 23972 CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 23913 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| |||||||| || ||||| || | | ||||||||| || || Sbjct 23912 AGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGG 23853 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| ||| || | || ||| | ||| ||||| | |||||| Sbjct 23852 ATGCCCTCTTTGTC-CTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCAC 23794 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 23793 CTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTTG 23742 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||| ||||| |||||||||||| |||||||| || Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| ||||||| |||||||| || ||||| || | | |||||| ||||| || Sbjct 24304 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGA 24245 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || ||| | ||| ||||| |||||| Sbjct 24244 ATACCTTCTTTGTCTTGGAT-TTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCAC 24186 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| | || || || || |||||||| Sbjct 24185 TTCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| || || ||||||||||||||||||||| ||| Sbjct 24592 CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAA 24533 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| | ||||| ||||| || || | | |||||||| || || Sbjct 24532 AGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGG 24473 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | |||||| | ||| ||||| | |||||| Sbjct 24472 ATGCCTTCTTTATCTTGGAT-TTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCAC 24414 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| ||||| ||||| | || || ||||| || ||||| Sbjct 24413 CTCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | ||||||||| || || |||||||||||| || || || ||| Sbjct 25048 CCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 24989 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| |||||||| || || || || || || || || ||||| || Sbjct 24988 AGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGA 24929 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| ||||| |||| || ||||| ||||||| Sbjct 24928 ATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCACT 24869 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| || || ||||| || || ||||| Sbjct 24868 TCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 >seq214 Length=17119 Score = 114 bits (126), Expect = 8e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| ||||| || | || ||||||||| || || ||||||||| ||||| ||||| Sbjct 954 CGCCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGC 1013 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| |||| ||||||| | |||||| || ||||| || || ||||| || ||||| | Sbjct 1014 TAAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAG 1073 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | ||||||||||| |||||| |||| ||| || || | ||||| Sbjct 1074 GTATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTCCA 1133 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || | || || || ||||| || ||||| || || || || ||||| ||| Sbjct 1134 CCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTTG 1186 >seq669 Length=42814 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||||||||| |||||| |||||||| ||||| || Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | ||||| || ||||| || | | |||||| ||||| || Sbjct 31675 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31734 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| |||| || ||| | || || || |||||| Sbjct 31735 ATACCTTCCTTGTC-CTGAATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCAC 31793 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| | || ||||| || |||||||| Sbjct 31794 TTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCAT 31841 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| || || |||||| |||||||| ||||| || Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||| || |||||||| || | ||| || ||||| || Sbjct 32357 AGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGGA 32416 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || ||||| |||||| |||| | || ||||| | ||| || Sbjct 32417 ATGCCTTCTTTGTCCTGAATCTTTGCCTTTACATTTTCGATAGTGTCAGAGGGCTCGACC 32476 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || ||||| | ||||||||||| || ||||| || Sbjct 32477 TCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTT 32526 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| || || ||| ||||| ||||| ||||| || Sbjct 31843 CCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAG 31902 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | ||||| || ||||| || | | |||||| ||||| || Sbjct 31903 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31962 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | |||||| | || || || | |||||| Sbjct 31963 ATGCCTTCCTTGTCCTGAATCTTT-GCCTTAACGTTTTCGATGGTATCGGAGGCCTCCAC 32021 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| | |||||||| || || ||||| Sbjct 32022 TTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314513473708385