Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq36628 114 5e-21 seq22457 111 7e-20 seq11509 100 1e-16 seq17369 98.7 4e-16 seq55168 96.9 1e-15 >seq36628 Length=791 Score = 114 bits (126), Expect = 5e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5028 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 5087 ||||||| || ||||| | ||||||||||||||||| ||| ||| |||||| ||||||| Sbjct 477 TGAAATAACAATCTTCTAACTTTTCGAACACTTCCCATGCCTGATTGGTTTCTAGCATTT 536 Query 5088 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGG 5128 | | |||||| |||||||| |||||||||||||| || ||| Sbjct 537 TGGTGTGACGTGCTGCGCCTCGTTCTGTCCAGAGAATAAGG 577 >seq22457 Length=815 Score = 111 bits (122), Expect = 7e-20 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 5030 AAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTTTT 5089 ||||| || || || | ||||| || |||||||| || |||||||||| |||||||| Sbjct 339 AAATAACAATCCTCTAACTTTTCAAATACTTCCCATGCTTGATCGGTTTCTAGCATTTTG 398 Query 5090 GCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGATT 5149 || ||||| |||||||||||||| ||||| |||| || || |||| ||| | ||| Sbjct 399 GCATGACGTGCTGCGCCGCGTTCAGTCCACAGGAAAAGCGAATGAACATTATCAGTTATT 458 Query 5150 TTCACAGA--GTAGTTAAAAGCTACTCTGTGCTTGAACTCACGTAAAGTTTCACCTTCAA 5207 |||||||| | || | || | || |||| || ||||| | ||||||||| | Sbjct 459 TTCACAGACCCTCTTTTAGAG--GGTTTGCGCTTAAATTCACGCAGTTCTTCACCTTCTA 516 Query 5208 GTTTGAA 5214 ||||||| Sbjct 517 GTTTGAA 523 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 27183 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 27241 ||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 27242 TCCAGCAAGGGCCACCA 27258 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 >seq17369 Length=1302 Score = 98.7 bits (108), Expect = 4e-16 Identities = 184/267 (69%), Gaps = 10/267 (4%) Strand=Plus/Minus Query 17015 TTCCATGCGATCGAATTCAGCAATATAGGCTTCCTTGAATGCAGCTGCTTTTTTACCAGT 17074 ||||||||||| |||||||||||||| ||||| || ||| |||||| |||| || || Sbjct 463 TTCCATGCGATTAAATTCAGCAATATAAGCTTCTTTAAATCGTGCTGCTATTTTGCCGGT 404 Query 17075 GAAGCCCATCACCAGGAAGACGAATCCGTTTTTGGTGATTTGGTACATTGGGCGTTGTTC 17134 || ||||| |||||||||| ||| || | |||||| || || ||| | | | Sbjct 403 AAATCCCATAACCAGGAAGATGAAACCATCTTTGGTCATAACATAATATGGTTGGGGCTT 344 Query 17135 GCC--TTTG-GCGTCGGTGT-----AGGTAACGTCCTCAAAATTGAGGGCGTTAAATTTC 17186 ||| |||| || ||| || || | |||||||||||| | ||||||| Sbjct 343 GCCGTTTTGTAATTCATTGTTTTTATGGCAAAG--CTCAAAATTGAGCTCTGTAAATTTA 286 Query 17187 TCTGAGCATTCAATATTTGCAATGGCACGTAATACGTTATCGTGTCGCTTGCAAAAATAT 17246 | |||||||||| |||| ||||| | ||| || | ||| || ||||||| Sbjct 285 GCGGAGCATTCAAGCCCATCAATAGCACGCATTACATTCTTGTGCAATTTTTTAAAATAT 226 Query 17247 TCGGCAACGGCAAAGGACGTAGTAACA 17273 | || |||||||| || || ||||| Sbjct 225 TTTGCTACGGCAAACGAAGTGCTAACA 199 >seq55168 Length=2163 Score = 96.9 bits (106), Expect = 1e-15 Identities = 203/301 (67%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 5025 GACTGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCA 5084 || ||||||| || ||||| | ||||||||||||||||| || |||||||||| |||| Sbjct 2075 GATTGAAATAACAATCTTCTAACTTTTCGAACACTTCCCAAGCTTGATCGGTTTCTAGCA 2016 Query 5085 TTTTTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGG 5144 |||| || || || ||||| | ||| | ||||| || || || ||||| || ||| Sbjct 2015 TTTTGGCATGGCGTGCTGCCTCACGTCCGGTCCACAGAATAAGTGAGCGTGTTTTGTGGG 1956 Query 5145 CGATTTTCACAGAGTAGTTAAAAGCTACTCTGTGCTTGAACTCACGTAAAGTTTCACCTT 5204 |||| | | | | |||| |||| || || | | | | || ||| Sbjct 1955 AAATTTGTA---AATGTCTTAAAGACACTC---GC---AAATTATTAACCGCCTCGCCTA 1905 Query 5205 CAAGTTTGAAGAAGTGTTTTTCCTCAATGAAACGACCTTTGTTTTCGTGGTGATTCTGGC 5264 | | ||| || ||||||| ||||||||||| | | || | || | || || | || Sbjct 1904 CTACTTTAAAATAGTGTTTATCCTCAATGAACCTATCTGTATTGCGATTATGGTTTTTGC 1845 Query 5265 GAATACGAATAGCTTCTGTGCCGTAAAGGTGCGCCAAAAGTTCGGTAGTGATAACGGGGA 5324 |||||||| || |||||| || || || | || || | || || ||||| || || | Sbjct 1844 GAATACGAGCAGGTTCTGTACCATACAGTTTAGCTAACAACTCAGTGGTGATTACCGGAA 1785 Query 5325 T 5325 | Sbjct 1784 T 1784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210786352556220