Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq22457 141 4e-29 seq54883 113 2e-20 seq36628 104 9e-18 seq11509 100 1e-16 seq55168 98.7 4e-16 seq39681 98.7 4e-16 seq17369 96.9 1e-15 >seq22457 Length=815 Score = 141 bits (156), Expect = 4e-29 Identities = 122/148 (82%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 29133 GTCGGGTGGAGAGGCGTAATACAATACCCGCAAGGGGAATATGCCCGGAGCATCTTTGAA 29192 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 814 GTCGGGTGGAGAGGCGTAATACAAGACCCGCAAGGGGAATATGCCCGGAGCATCTTTTGT 755 Query 29193 GGCTCTAGTTGACACCCGATCACCAGCCACTAACTGGTGATTGCTAACTAAAACTTCAAA 29252 ||||| |||||||||||| ||||||| ||| ||||| | | | |||||||| ||| Sbjct 754 GGCTCCAGTTGACACCCG-GCACCAGCTACTGACTGGCGCTGAC--ACTAAAACACAAAA 698 Query 29253 GGAG--GTCATCATGACCAGTCAACTCA 29278 |||| ||||||| | | |||| ||| Sbjct 697 GGAGCACCCATCATGGCGACTCAAATCA 670 Score = 134 bits (148), Expect = 5e-27 Identities = 200/283 (71%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 20994 AATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTATATGGCACAGAACCAGATTAC 21053 ||||| || || |||| |||||| | ||||| || |||||||| | | | | Sbjct 637 AATATTCCAGTAATGACAACAGAGTTGCTTGCTGAATTGTATGGCACGGTAATTAAAAAT 578 Query 21054 ATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTTA 21113 |||| || |||||| ||| ||| | | || ||||| | |||||||| | || | Sbjct 577 ATCCACAATAATTTCTCTCGTAATGCGGATCGGTTTGTCGTTGGTAAGCATCATTTCAAA 518 Query 21114 CTTGAGAATGAGGAGTTGCGGGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGTGAAA 21173 || || ||| || |||| |||||||||| || ||| |||| ||||||||| Sbjct 517 CTAGAAGGTGAAGAACTGCGTGAATTTAAGCGCAAACCCTCTAAAAGAGGGTCTGTGAAA 458 Query 21174 ATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGCGCAGCCCGTCACGCA 21233 || | ||| |||| || || |||| ||||| |||||||||||||| ||||| || Sbjct 457 ATAACTGATAATGTTCATTCGCTTTTCCTGTGGACTGAACGCGGCGCAGCACGTCATGCC 398 Query 21234 AAAATGCTACAGAAACCGATCGGGCGTGGGAAGTGTTCGAAAA 21276 |||||||| ||||||||||| || |||||||| || ||||| Sbjct 397 AAAATGCT--AGAAACCGATCAAGCATGGGAAGTATTTGAAAA 357 >seq54883 Length=869 Score = 113 bits (124), Expect = 2e-20 Identities = 103/125 (82%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 29133 GTCGGGTGGAGAGGCGTAATACAATACCCGCAAGGGGAATATGCCCGGAGCATCTTTGAA 29192 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 868 GTCGGGTGGAGAGGCGTAATACAAGACCCGCAAGGGGAATATGCCCGGAGCGTCTATG-G 810 Query 29193 GGCTCTAGTTGACACCCGATCACCAGCCACTAACTGGTGATTGCTA-ACTAAAACTTCAA 29251 ||||||||||||||||| | |||| ||| || || |||| | ||||||| || Sbjct 809 TGCTCTAGTTGACACCCG-GCGCCAGTTACTGAC-ACTGGTTGCCATACTAAAAAACCAT 752 Query 29252 AGGAG 29256 ||||| Sbjct 751 AGGAG 747 >seq36628 Length=791 Score = 104 bits (114), Expect = 9e-18 Identities = 87/105 (83%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 21194 CCTCATCCTCTGGACAGAACGCGGCGCAGCCCGTCACGCAAAAATGCTACAGAAACCGAT 21253 ||| || |||||||||||||| |||||||| |||||| | |||||||| ||||||| || Sbjct 577 CCTTATTCTCTGGACAGAACGAGGCGCAGCACGTCACACCAAAATGCT--AGAAACCAAT 520 Query 21254 CGGGCGTGGGAAGTGTTCGAAAAACTGGAAGAGCCTGCTATTTCA 21298 | ||| ||||||||||||||||| | ||||| || ||||||| Sbjct 519 CAGGCATGGGAAGTGTTCGAAAAGTTAGAAGA--TTGTTATTTCA 477 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||| ||| Sbjct 32003 TGGTGGCCCCTGCTGGATTCGAACCAGCGACCCAGCGATTATGAGTCGCTTGCTCTAACC 31944 Query 10273 -ACTGAGCTAAAGGGCC 10288 |||||||||| ||||| Sbjct 31943 AACTGAGCTAAGGGGCC 31927 >seq55168 Length=2163 Score = 98.7 bits (108), Expect = 4e-16 Identities = 385/585 (66%), Gaps = 39/585 (7%) Strand=Plus/Plus Query 20730 TATATTCTGCCTCATGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAG 20789 ||||||| ||| || |||||| || ||||||| |||||||||| |||||||||||| || Sbjct 1517 TATATTC-GCCGCA-GGTGCTGAACACACCTT--CAAGTAGCGGATACCGCGCCCGAAAG 1572 Query 20790 ACATGCGGtttttttGTGTCCAGTCTTCTTGGTTTATGACCGGG---CGTGCGGCTAATA 20846 ||||||||||||| |||| | || ||||| |||| || || | | || Sbjct 1573 TAATGCGGTTTTTTTACATCCATAGAT--TG--TTATGGTCGGGTAGCGAGCAGGGA-TA 1627 Query 20847 CAATACCAGCAATGGGAATA-TGCCCGCCGACTACTTGCGGTTTTGA-GCGCCCGGTCAC 20904 ||||||| || ||||| | ||| ||| ||||||| ||| || | | |||| | | Sbjct 1628 CAATACCCAAAAGGGGAAAACTGCTGGCCTTCTACTTGAGGTGTTCAAGTACCCGACCTC 1687 Query 20905 CCTCTCAA-AAGGGGTAAATCAAAATATCAAGTAGGACGCAAAGCATGAAAAC-CATCTC 20962 | | || || || ||||| || ||||||||||| || |||| | || | | Sbjct 1688 CATTAAAATAATGGATAAATTGAACAATCAAGTAGGAATGTAAAAATGACTATGCAGCGC 1747 Query 20963 CGTG--GAGTCCCTCTCCATAATTTCATTTAGTAATATACCTGTGGTGACTACAGAGCTT 21020 | || || || | ||| | || || || || || | || || ||| | Sbjct 1748 TATATCGAAAAACTTTCTGTCATTACGCATAATAGAATTCCGGTAATCACCACTGAGTTG 1807 Query 21021 CTTGCCAGCTTATATGGCACAGAACCAGATTACATCCGAAAAAATTTCAATCGGAATTCT 21080 | || | | ||||| |||||||| | | || || ||||| ||||| ||| | Sbjct 1808 TTAGCTAAACTGTATGGTACAGAACCTGCTCGTATTCGCAAAAACCATAATCGCAATACA 1867 Query 21081 GGACGATTTGTTATCGGTAAGCACTACTTTTTACTTGAGAATGAGGAGTTGCGGG----A 21136 | | || || | ||| ||||| ||||| || | ||| | |||| | Sbjct 1868 GATAGGTTCATTGAGGATAAACACTA--TTTTAA---AGTAGTAGGCGAGGCGGTTAATA 1922 Query 21137 ATTTAAGCACAGCATGTCTTTAAGACCTTCTGTGAAAATCGCCCGTAACGTTCGCTCCCT 21196 |||| | || |||||||||||| || | |||| ||| || ||||| || Sbjct 1923 ATTTGCG---AG--TGTCTTTAAGACATT---TACAAATTTCCCACAAAACACGCTCACT 1974 Query 21197 CATCCTCTGGACAGAACGCGGCGCAGCCCGTCACGCAAAAATGCTACAGAAACCGATCGG 21256 || || ||||| | ||| | ||||| || || || ||||||||| |||||||||| Sbjct 1975 TATTCTGTGGACCGGACGTGAGGCAGCACGCCATGCCAAAATGCTA--GAAACCGATCAA 2032 Query 21257 GCGTGGGAAGTGTTCGAAAAACTGGAAGAGCCTGCTATTTCAGTC 21301 || ||||||||||||||||| | ||||| || ||||||| || Sbjct 2033 GCTTGGGAAGTGTTCGAAAAGTTAGAAGA--TTGTTATTTCAATC 2075 >seq39681 Length=3370 Score = 98.7 bits (108), Expect = 4e-16 Identities = 86/105 (82%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 21194 CCTCATCCTCTGGACAGAACGCGGCGCAGCCCGTCACGCAAAAATGCTACAGAAACCGAT 21253 ||| || |||| ||||||||| |||||||| |||||||| ||||||||| ||||||||| Sbjct 54 CCTTATTCTCTAGACAGAACGAGGCGCAGCACGTCACGCCAAAATGCTA--GAAACCGAT 111 Query 21254 CGGGCGTGGGAAGTGTTCGAAAAACTGGAAGAGCCTGCTATTTCA 21298 | || |||||||| |||||||| | ||||| || ||||||| Sbjct 112 CAAGCATGGGAAGTATTCGAAAAGTTAGAAGA--TTGTTATTTCA 154 >seq17369 Length=1302 Score = 96.9 bits (106), Expect = 1e-15 Identities = 190/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 20091 AATGGTCGCGCTGTTACTACGTCCTTTGCCGTTGCCGAATATTTTTGCAAGCGACACGAT 20150 |||||| | ||||| || || |||||||| || |||||||| || ||| | Sbjct 188 AATGGTAAGGTTGTTAGCACTTCGTTTGCCGTAGCAAAATATTTTAAAAAATTGCACAAG 247 Query 20151 AACGTATTGCGCGCCATTGCAAATATTGAATGCTCAGAGAAATTTAACGCCCTCAATTTT 20210 || ||| |||| || |||| |||||||||| | ||||||| | ||||||||| Sbjct 248 AATGTAATGCGTGCTATTGATGGGCTTGAATGCTCCGCTAAATTTACAGAGCTCAATTTT 307 Query 20211 GAGGACGTTACCT-----ACACCGACGC-CAAA--GGCGAACAACGCCCAATGTACCAAA 20262 ||| | || || ||| || |||| ||| | | | ||| || | Sbjct 308 GAG--CTTTGCCATAAAAACAATGAATTACAAAACGGCAAGCCCCAACCATATTATGTTA 365 Query 20263 TCACCAAAAACGGCTTCGTTTTTCTGGTGATGGGCTTCACCGGCAAAAAAGCAGCTGCAT 20322 | |||||| | || ||| | || ||||| ||||| || |||||||||| |||||| || Sbjct 366 TGACCAAAGATGGTTTCATCTTCCTGGTTATGGGATTTACCGGCAAAATAGCAGCACGAT 425 Query 20323 TCAAGGAAGCCTACATTGCTGAATTCGATCGCATGGAA 20360 | || ||||| || ||||||||||| ||||||||||| Sbjct 426 TTAAAGAAGCTTATATTGCTGAATTTAATCGCATGGAA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195059798713330