Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq22457 143 1e-29 seq36628 114 5e-21 seq54883 113 2e-20 seq55168 111 6e-20 seq17369 100 1e-16 >seq22457 Length=815 Score = 143 bits (158), Expect = 1e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 14469 AAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTTTT 14528 ||||| || || || | ||||| || |||||||| || |||||||||| |||||||| Sbjct 339 AAATAACAATCCTCTAACTTTTCAAATACTTCCCATGCTTGATCGGTTTCTAGCATTTTG 398 Query 14529 GCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGATT 14588 || ||||| |||||||||||||| ||||| |||| || || |||| ||| | ||| Sbjct 399 GCATGACGTGCTGCGCCGCGTTCAGTCCACAGGAAAAGCGAATGAACATTATCAGTTATT 458 Query 14589 TTCACAGAAGGTCTTAAAGACATGCTGTGCTTAAATTCCCGCAACTCCTCATTCTCAAGT 14648 |||||||| |||| ||| || |||||||||| |||| || ||| || ||| Sbjct 459 TTCACAGACCCTCTTTTAGAGGGTTTGCGCTTAAATTCACGCAGTTCTTCACCTTCTAGT 518 Query 14649 AAAAAGTAGTGCTTACCGATAACAAATCGTCCAGAATTCCGATTGAAATTTTTTCGGATG 14708 || | |||||||| | ||||| || | | ||| ||| |||||| || |||| Sbjct 519 TTGAAATGATGCTTACCAACGACAAACCGATCCGCATTACGAGAGAAATTATTGTGGATA 578 Query 14709 TAATCTGGTTCTGTGCCATATAAGCTGGCAAGAAGCTCTGTAGTCACCACAGGTATATT 14767 | | | | |||||||| || ||||| | |||||| |||| || || ||||| Sbjct 579 TTTTTAATTACCGTGCCATACAATTCAGCAAGCAACTCTGTTGTCATTACTGGAATATT 637 Score = 141 bits (156), Expect = 4e-29 Identities = 122/148 (82%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 5262 TGAGTTGACTGGTCATGATGAC--CTCCTTTGAAGTTTTAGTTAGCAATCACCAGTTAGT 5319 ||| |||| | | ||||||| ||||||| |||||||| | | | ||||| ||| Sbjct 670 TGATTTGAGTCGCCATGATGGGTGCTCCTTTTGTGTTTTAGT--GTCAGCGCCAGTCAGT 727 Query 5320 GGCTGGTGATCGGGTGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCG 5379 ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 728 AGCTGGTGC-CGGGTGTCAACTGGAGCCACAAAAGATGCTCCGGGCATATTCCCCTTGCG 786 Query 5380 GGTATTGTATTACGCCTCTCCACCCGAC 5407 ||| |||||||||||||||||||||||| Sbjct 787 GGTCTTGTATTACGCCTCTCCACCCGAC 814 >seq36628 Length=791 Score = 114 bits (126), Expect = 5e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 14467 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 14526 ||||||| || ||||| | ||||||||||||||||| ||| ||| |||||| ||||||| Sbjct 477 TGAAATAACAATCTTCTAACTTTTCGAACACTTCCCATGCCTGATTGGTTTCTAGCATTT 536 Query 14527 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGG 14567 | | |||||| |||||||| |||||||||||||| || ||| Sbjct 537 TGGTGTGACGTGCTGCGCCTCGTTCTGTCCAGAGAATAAGG 577 >seq54883 Length=869 Score = 113 bits (124), Expect = 2e-20 Identities = 103/125 (82%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 5284 CTCCTTTGAAGTTTTAGT-TAGCAATCACCAGTTAGTGGCTGGTGATCGGGTGTCAACTA 5342 ||||| || ||||||| | |||| || || ||| |||| | ||||||||||||| Sbjct 747 CTCCTATGGTTTTTTAGTATGGCAACCAGT-GTCAGTAACTGGCGC-CGGGTGTCAACTA 804 Query 5343 GAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCCTCTCCAC 5402 |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 805 GAGCAC-CATAGACGCTCCGGGCATATTCCCCTTGCGGGTCTTGTATTACGCCTCTCCAC 863 Query 5403 CCGAC 5407 ||||| Sbjct 864 CCGAC 868 >seq55168 Length=2163 Score = 111 bits (122), Expect = 6e-20 Identities = 384/581 (66%), Gaps = 35/581 (6%) Strand=Plus/Minus Query 14464 GACTGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCA 14523 || ||||||| || ||||| | ||||||||||||||||| || |||||||||| |||| Sbjct 2075 GATTGAAATAACAATCTTCTAACTTTTCGAACACTTCCCAAGCTTGATCGGTTTCTAGCA 2016 Query 14524 TTTTTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGG 14583 |||| || || || ||||| | ||| | ||||| || || || ||||| || ||| Sbjct 2015 TTTTGGCATGGCGTGCTGCCTCACGTCCGGTCCACAGAATAAGTGAGCGTGTTTTGTGGG 1956 Query 14584 CGATTTTCACAGAAGGTCTTAAAGACATGCTGTGCTTAAATT----CCCGCAACTCCTCA 14639 |||| | || |||||||||||| || | ||||| |||| | ||| Sbjct 1955 AAATTTGTA---AATGTCTTAAAGACA--CT---CGCAAATTATTAACCGCCTCGCCTAC 1904 Query 14640 TTCTCAAGTAAAAAGTAGTGCTTACCGATAACAAATCGTCCAGAATTCCGATTGAAATTT 14699 | || ||||| ||||| ||| | || || | | | ||| ||||| ||| Sbjct 1903 TACT---TTAAAA--TAGTGTTTATCCTCAATGAACCTATCTGTATTGCGATTATGGTTT 1849 Query 14700 TTTCGGATGTAATCTGGTTCTGTGCCATATAAGCTGGCAAGAAGCTCTGTAGTCACCACA 14759 || || || | | |||||||| ||||| | | || | | ||| || || | || Sbjct 1848 TTGCGAATACGAGCAGGTTCTGTACCATACAGTTTAGCTAACAACTCAGTGGTGATTACC 1789 Query 14760 GGTATATTACTAAATGAAATTATGGAGAGGGACTC--CACGGAGATG-GTTTTCATGCTT 14816 || || || || | ||| | || || || | | | || | |||| || Sbjct 1788 GGAATTCTATTATGCGTAATGACAGAAAGTTTTTCGATATAGCGCTGCATAGTCATTTTT 1729 Query 14817 TGCGTCCTACTTGATATTTTGATTTACCCCTT-TTGAGAGGGTGACCGGGCGC-TCAAAA 14874 ||||||||||| || ||||| || || || | || | |||| | | || | Sbjct 1728 ACATTCCTACTTGATTGTTCAATTTATCCATTATTTTAATGGAGGTCGGGTACTTGAACA 1669 Query 14875 CCGCAAGTAGTCGGCGGGCA-TATTCCCATTGCTGGTATTGTATTAGCCGCACG---CCC 14930 || ||||||| ||| ||| | ||||| || ||||||||| | | || || ||| Sbjct 1668 CCTCAAGTAGAAGGCCAGCAGTTTTCCCCTTTTGGGTATTGTA-TCCCTGCTCGCTACCC 1610 Query 14931 GGTCATAAACCAAGAAGACTGGACACaaaaaaaCCGCATGTCTGTCGGGCGCGGTAACCG 14990 | ||||| || | |||| ||||||||||||| || |||||||||||| ||| Sbjct 1609 GACCATAA--CA--ATCTATGGATGTAAAAAAACCGCATTACTTTCGGGCGCGGTATCCG 1554 Query 14991 CTACTTGCTAAGGTGTTTTGAGCACCATGAGGCAGAATATA 15031 ||||||| ||||||| || |||||| || ||| ||||||| Sbjct 1553 CTACTTG--AAGGTGTGTTCAGCACC-TGCGGC-GAATATA 1517 >seq17369 Length=1302 Score = 100 bits (110), Expect = 1e-16 Identities = 193/279 (69%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 15401 TTCCATGCGATCGAATTCAGCAATGTAGGCTTCTTTGAAAGCG-GCGGCTTTTTTGCCAG 15459 ||||||||||| ||||||||||| || |||||||| ||| || || ||| ||||||| | Sbjct 463 TTCCATGCGATTAAATTCAGCAATATAAGCTTCTTT-AAATCGTGCTGCTATTTTGCCGG 405 Query 15460 TGAACCCCATCACCAGGAAAACGAATCCGTTTTTGGTGATTTGGTACATTGGGCGTTGCT 15519 | || ||||| |||||||| | ||| || | |||||| || || ||| | ||| Sbjct 404 TAAATCCCATAACCAGGAAGATGAAACCATCTTTGGTCATAACATAATATGGTTGGGGCT 345 Query 15520 CGCC--TTTG-GCGTCGGTGT-----AGGTAACGTCCTCAAAATTGAGGGCGTTAAATTT 15571 ||| |||| || ||| || || | |||||||||||| | ||||||| Sbjct 344 TGCCGTTTTGTAATTCATTGTTTTTATGGCAAAG--CTCAAAATTGAGCTCTGTAAATTT 287 Query 15572 CTCTGAGCATTCAATATTTGCAATGGCGCGCAATACGTTATCGTGTCGCTTGCAAAAATA 15631 | |||||||||| |||| || |||| ||| || | ||| || |||||| Sbjct 286 AGCGGAGCATTCAAGCCCATCAATAGCACGCATTACATTCTTGTGCAATTTTTTAAAATA 227 Query 15632 TTCGGCAACGGCAAAGGACGTAGTAACAGCGCGACCATT 15670 || || |||||||| || || ||||| | |||||| Sbjct 226 TTTTGCTACGGCAAACGAAGTGCTAACAACCTTACCATT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200860373456540